D. rerio Gene: mat1a - ENSDARG00000039605 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039605
Namemat1a
Descriptionmethionine adenosyltransferase I, alpha [Source:ZFIN;Acc:ZDB-GENE-030131-6127]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fi35e01, zgc:55442

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
224
  • 224
  • 1.10e4
  • 1.12e4
  • 1.12e4
  • 1.12e4
  • 1.21e4
99.25
  • 99.25
  • 63.32
  • 62.49
  • 62.48
  • 62.48
  • 59.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
367
  • 367
98.77
  • 98.77
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
459
  • 459
  • 782
  • 953
  • 1.19e3
  • 1.21e3
  • 1.29e3
  • 1.49e3
  • 1.61e3
  • 1.83e3
  • 2.15e3
98.47
  • 98.47
  • 97.38
  • 96.81
  • 96.00
  • 95.95
  • 95.70
  • 95.02
  • 94.61
  • 93.86
  • 92.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
542
  • 542
98.19
  • 98.19
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
661
  • 661
97.79
  • 97.79
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
822
  • 822
  • 823
  • 961
97.25
  • 97.25
  • 97.25
  • 96.78
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
929
  • 929
  • 989
  • 1.24e3
  • 1.26e3
  • 1.27e3
  • 1.39e3
  • 3.03e3
  • 3.72e3
  • 5.11e3
  • 8.87e3
  • 1.13e4
  • 1.34e4
  • 1.35e4
  • 1.45e4
96.89
  • 96.89
  • 96.69
  • 95.84
  • 95.78
  • 95.76
  • 95.36
  • 89.87
  • 87.56
  • 82.91
  • 70.31
  • 62.08
  • 55.05
  • 54.83
  • 51.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.80e3
  • 1.80e3
93.99
  • 93.99
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.51e3
  • 2.51e3
91.59
  • 91.59
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.55e3
  • 3.55e3
88.11
  • 88.11
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.42e3
  • 4.42e3
  • 1.21e4
85.22
  • 85.22
  • 59.50
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
4.65e3
  • 4.65e3
  • 8.09e3
84.44
  • 84.44
  • 72.91
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.99e3
  • 4.99e3
  • 1.93e4
83.30
  • 83.30
  • 35.54
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.16e3
  • 5.16e3
  • 1.00e4
82.74
  • 82.74
  • 66.51
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.67e3
  • 6.67e3
77.68
  • 77.68
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.89e3
  • 6.89e3
76.94
  • 76.94
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.93e3
  • 6.93e3
76.80
  • 76.80
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.45e3
  • 7.45e3
75.07
  • 75.07
AEIR
  • AEIR
UBERON:0003080anterior neural tube
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.71e3
  • 7.71e3
74.19
  • 74.19
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
8.19e3
  • 8.19e3
  • 1.69e4
  • 1.75e4
72.57
  • 72.57
  • 43.58
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.53e3
  • 8.53e3
71.45
  • 71.45
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
9.40e3
  • 9.40e3
  • 1.15e4
  • 1.51e4
68.54
  • 68.54
  • 61.66
  • 49.30
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.86e3
  • 9.86e3
66.99
  • 66.99
AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.96e3
  • 9.96e3
  • 1.05e4
  • 1.05e4
  • 1.10e4
  • 1.10e4
  • 1.10e4
  • 1.12e4
  • 1.32e4
  • 1.32e4
66.65
  • 66.65
  • 64.69
  • 64.69
  • 63.32
  • 63.32
  • 63.32
  • 62.48
  • 55.86
  • 55.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.09e4
  • 1.09e4
63.42
  • 63.42
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
1.09e4
  • 1.09e4
  • 1.37e4
63.37
  • 63.37
  • 54.13
AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.16e4
  • 1.16e4
  • 1.18e4
  • 1.34e4
  • 1.41e4
  • 1.41e4
61.09
  • 61.09
  • 60.50
  • 54.97
  • 52.75
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.18e4
  • 1.18e4
  • 1.20e4
60.50
  • 60.50
  • 59.98
AEIR
  • AEIR
  • AEIR
UBERON:0003072optic cup
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.34
  • 54.34
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.36
  • 50.36
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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