D. rerio Gene: slc6a1b - ENSDARG00000039647 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039647
Nameslc6a1b
Descriptionsolute carrier family 6 (neurotransmitter transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-041114-57]
OrganismDanio rerio (zebrafish)
Synonym(s)gat-1, slc6a1, wu:fj45h10, wu:fq41d04, zgc:103663, zgc:103663gn

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
388
  • 388
  • 645
  • 1.20e3
  • 2.15e3
  • 2.59e3
  • 7.36e3
  • 1.11e4
  • 1.16e4
  • 1.34e4
98.71
  • 98.71
  • 97.84
  • 96.00
  • 92.80
  • 91.31
  • 75.36
  • 62.91
  • 61.12
  • 55.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
405
  • 405
  • 2.99e3
  • 6.79e3
  • 8.65e3
  • 9.51e3
98.65
  • 98.65
  • 90.00
  • 77.27
  • 71.03
  • 68.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
603
  • 603
  • 1.95e3
97.98
  • 97.98
  • 93.47
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
675
  • 675
  • 4.31e3
  • 8.64e3
  • 8.88e3
97.74
  • 97.74
  • 85.55
  • 71.07
  • 70.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
796
  • 796
  • 2.10e3
  • 3.19e3
97.34
  • 97.34
  • 92.97
  • 89.34
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
948
  • 948
  • 1.66e3
  • 2.79e3
  • 8.76e3
  • 1.06e4
  • 1.42e4
  • 1.47e4
96.83
  • 96.83
  • 94.46
  • 90.65
  • 70.67
  • 64.44
  • 52.54
  • 50.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000037Larval:Day 5
4.27e3
  • 4.27e3
85.71
  • 85.71
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.03e3
  • 7.03e3
  • 7.08e3
76.46
  • 76.46
  • 76.30
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.08e3
  • 7.08e3
  • 7.47e3
  • 8.09e3
  • 8.30e3
  • 8.40e3
  • 9.44e3
  • 9.44e3
76.30
  • 76.30
  • 74.99
  • 72.90
  • 72.21
  • 71.86
  • 68.40
  • 68.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
  • 7.91e3
  • 7.97e3
  • 8.54e3
  • 8.54e3
74.99
  • 74.99
  • 73.52
  • 73.32
  • 71.42
  • 71.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
7.83e3
  • 7.83e3
  • 8.22e3
  • 8.22e3
  • 8.65e3
  • 8.96e3
  • 9.07e3
  • 9.10e3
  • 9.71e3
73.79
  • 73.79
  • 72.48
  • 72.48
  • 71.04
  • 69.98
  • 69.62
  • 69.55
  • 67.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.91e3
  • 7.91e3
  • 8.22e3
  • 8.22e3
  • 8.54e3
  • 8.65e3
  • 8.83e3
  • 9.51e3
73.52
  • 73.52
  • 72.48
  • 72.48
  • 71.41
  • 71.04
  • 70.44
  • 68.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
7.97e3
  • 7.97e3
  • 8.04e3
  • 8.54e3
  • 9.19e3
73.32
  • 73.32
  • 73.07
  • 71.42
  • 69.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.30e3
  • 8.30e3
  • 8.30e3
  • 8.45e3
  • 8.65e3
  • 8.72e3
  • 8.79e3
  • 9.10e3
  • 9.51e3
72.21
  • 72.21
  • 72.21
  • 71.72
  • 71.04
  • 70.81
  • 70.57
  • 69.55
  • 68.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.30e3
  • 8.30e3
  • 8.40e3
  • 8.40e3
  • 8.79e3
  • 8.79e3
  • 9.34e3
  • 9.67e3
72.21
  • 72.21
  • 71.86
  • 71.86
  • 70.57
  • 70.57
  • 68.74
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.79e3
  • 8.79e3
  • 8.79e3
  • 8.79e3
70.57
  • 70.57
  • 70.57
  • 70.57
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.96e3
  • 8.96e3
  • 8.96e3
  • 9.19e3
  • 9.34e3
  • 9.34e3
  • 9.51e3
  • 9.60e3
  • 9.96e3
69.98
  • 69.98
  • 69.98
  • 69.22
  • 68.74
  • 68.74
  • 68.16
  • 67.85
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.50
  • 65.50
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
  • 1.33e4
64.26
  • 64.26
  • 55.63
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
1.21e4
  • 1.21e4
59.56
  • 59.56
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.55
  • 59.55
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.26
  • 58.26
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.24
  • 58.24
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.26e4
  • 1.26e4
57.67
  • 57.67
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.52
  • 45.52
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.70e4
  • 1.70e4
43.24
  • 43.24
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.74
  • 36.74
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.49
  • 35.49
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
34.96
  • 34.96
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC085579, CU633837, CU855911
EnsemblENSDARG00000039647 (slc6a1b)
Uniprot/SPTREMBLQ5U3E5, Q5U3E5_DANRE
ZFINZDB-GENE-041114-57 (slc6a1b)

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