D. rerio Gene: tb - ENSDARG00000039806 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039806
Nametb
DescriptionT, brachyury homolog b [Source:ZFIN;Acc:ZDB-GENE-081028-48]
OrganismDanio rerio (zebrafish)
Synonym(s)bra, brachyury, no tail b, ntlb, si:ch211-130h14.5

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
8.36e3
  • 8.36e3
  • 9.86e3
72.00
  • 72.00
  • 67.00
AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
9.96e3
  • 9.96e3
  • 1.32e4
  • 1.32e4
  • 1.34e4
  • 1.36e4
66.66
  • 66.66
  • 55.97
  • 55.86
  • 54.97
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
1.26e4
  • 1.26e4
  • 1.31e4
  • 1.34e4
57.87
  • 57.87
  • 56.23
  • 55.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000024Segmentation:5-9 somites
1.29e4
  • 1.29e4
56.65
  • 56.65
AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
  • 1.38e4
  • 1.39e4
  • 1.40e4
56.23
  • 56.23
  • 53.83
  • 53.31
  • 53.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
  • 1.36e4
  • 1.38e4
55.24
  • 55.24
  • 54.53
  • 53.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.75
  • 45.75
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.00
  • 40.00
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
1.81e4
  • 1.81e4
  • 1.84e4
  • 1.91e4
  • 2.06e4
39.48
  • 39.48
  • 38.50
  • 36.14
  • 31.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.96e4
  • 1.96e4
  • 2.09e4
34.35
  • 34.35
  • 29.99
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.23
  • 33.23
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.10e4
  • 2.10e4
29.62
  • 29.62
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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