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D. rerio Gene: CCDC89 - ENSDARG00000039824 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039824
NameCCDC89
Descriptionzgc:172182 [Source:ZFIN;Acc:ZDB-GENE-080204-56]
OrganismDanio rerio (zebrafish)
Synonym(s)boip, ccdc89, flj38159
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
805
  • 805
97.31
  • 97.31
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.58
  • 61.58
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
  • 2.25e4
59.44
  • 59.44
  • 24.56
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.09
  • 58.09
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.46e4
  • 1.46e4
50.96
  • 50.96
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.47e4
  • 1.47e4
50.75
  • 50.75
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.84
  • 49.84
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
1.56e4
  • 1.56e4
  • 1.62e4
  • 1.77e4
  • 1.82e4
  • 1.99e4
47.73
  • 47.73
  • 45.76
  • 40.86
  • 39.06
  • 33.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.11
  • 45.11
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.77e4
  • 1.77e4
40.76
  • 40.76
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.19
  • 39.19
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
35.91
  • 35.91
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.00e4
  • 2.00e4
  • 2.01e4
33.12
  • 33.12
  • 32.80
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.16e4
  • 2.16e4
27.52
  • 27.52
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000039824 (CCDC89)
HGNCHGNC:26762 (CCDC89)
ZFINZDB-GENE-080204-56 (zgc:172182)
EMBLCABZ01049294, CU182074
Uniprot/SPTREMBLF1QDY9, F1QDY9_DANRE, F1R502, F1R502_DANRE

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