D. rerio Gene: bbs5 - ENSDARG00000039827 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039827
Namebbs5
DescriptionBardet-Biedl syndrome 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1083]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:56578
Orthologs(s)21 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
1.81e3
  • 1.81e3
  • 5.28e3
  • 8.80e3
  • 1.04e4
  • 1.34e4
93.95
  • 93.95
  • 82.31
  • 70.53
  • 65.05
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.42e3
  • 4.42e3
  • 1.08e4
85.20
  • 85.20
  • 63.88
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
7.36e3
  • 7.36e3
  • 1.24e4
75.36
  • 75.36
  • 58.56
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.64e3
  • 8.64e3
71.06
  • 71.06
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
8.79e3
  • 8.79e3
  • 9.13e3
  • 9.71e3
70.57
  • 70.57
  • 69.43
  • 67.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.84e3
  • 8.84e3
70.41
  • 70.41
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
8.99e3
  • 8.99e3
  • 1.13e4
  • 1.27e4
  • 1.27e4
  • 1.27e4
  • 1.29e4
  • 1.31e4
  • 1.33e4
  • 1.38e4
  • 1.60e4
69.89
  • 69.89
  • 62.26
  • 57.42
  • 57.32
  • 57.31
  • 56.75
  • 55.97
  • 55.36
  • 53.69
  • 46.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.07e3
  • 9.07e3
69.65
  • 69.65
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.47e3
  • 9.47e3
68.28
  • 68.28
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.00e4
  • 1.00e4
66.50
  • 66.50
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.94
  • 64.94
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.08e4
  • 1.08e4
  • 1.08e4
  • 1.26e4
63.90
  • 63.90
  • 63.83
  • 57.81
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.13e4
  • 1.13e4
62.24
  • 62.24
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
1.13e4
  • 1.13e4
  • 1.13e4
  • 1.19e4
  • 1.24e4
  • 1.43e4
62.22
  • 62.22
  • 62.04
  • 60.12
  • 58.52
  • 52.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.13e4
  • 1.13e4
  • 1.18e4
  • 1.24e4
  • 1.24e4
  • 1.24e4
  • 1.38e4
62.19
  • 62.19
  • 60.55
  • 58.58
  • 58.45
  • 58.38
  • 53.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.14e4
  • 1.14e4
61.75
  • 61.75
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.17e4
  • 1.17e4
  • 1.22e4
60.84
  • 60.84
  • 59.06
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.18e4
  • 1.18e4
  • 1.18e4
  • 1.25e4
  • 1.26e4
  • 1.26e4
60.50
  • 60.50
  • 60.39
  • 58.31
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
1.18e4
  • 1.18e4
  • 1.26e4
  • 1.28e4
  • 1.29e4
  • 1.29e4
  • 1.31e4
60.50
  • 60.50
  • 57.87
  • 57.13
  • 56.65
  • 56.65
  • 56.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
  • 1.26e4
59.98
  • 59.98
  • 57.94
AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.20e4
  • 1.20e4
  • 1.21e4
  • 1.21e4
  • 1.21e4
  • 1.25e4
59.98
  • 59.98
  • 59.50
  • 59.36
  • 59.36
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.91
  • 59.91
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
1.24e4
  • 1.24e4
  • 1.28e4
  • 1.29e4
  • 1.30e4
  • 1.32e4
  • 1.34e4
  • 1.34e4
  • 1.34e4
  • 1.40e4
  • 1.41e4
  • 1.42e4
  • 1.43e4
  • 1.46e4
  • 1.48e4
58.34
  • 58.34
  • 57.27
  • 56.64
  • 56.54
  • 55.72
  • 55.26
  • 55.24
  • 54.97
  • 53.14
  • 52.89
  • 52.32
  • 52.24
  • 51.11
  • 50.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.27
  • 58.27
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.28e4
  • 1.28e4
57.28
  • 57.28
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
1.34e4
  • 1.34e4
55.24
  • 55.24
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.26
  • 53.26
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.19
  • 53.19
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.47e4
  • 1.47e4
  • 1.54e4
50.83
  • 50.83
  • 48.59
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.42
  • 49.42
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.74
  • 48.74
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.78
  • 46.78
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.58
  • 43.58
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.56
  • 42.56
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.83
  • 41.83
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.24
  • 41.24
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.14
  • 41.14
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.68
  • 40.68
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.28
  • 40.28
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi14 species14 genesCompare expression
Bilateria21 species21 genesCompare expression

Orthology information comes from OMA : ENSDARG00000039827.

Cross-references

EnsemblENSDARG00000039827 (bbs5)
ZFINZDB-GENE-040426-1083 (bbs5)
EMBLBC049492
Uniprot/SWISSPROTBBS5_DANRE, Q7ZWB7

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