D. rerio Gene: hlcs - ENSDARG00000039934 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039934
Namehlcs
Descriptionholocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) [Source:ZFIN;Acc:ZDB-GENE-030131-5333]
OrganismDanio rerio (zebrafish)
Synonym(s)est269366, ig:est269366, im:6962365

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.44e3
  • 1.44e3
95.18
  • 95.18
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.49e3
  • 2.49e3
  • 9.25e3
91.67
  • 91.67
  • 69.03
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.38e3
  • 3.38e3
88.69
  • 88.69
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.93e3
  • 4.93e3
83.49
  • 83.49
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.06e3
  • 5.06e3
83.06
  • 83.06
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.67e3
  • 5.67e3
81.01
  • 81.01
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.92e3
  • 5.92e3
80.20
  • 80.20
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.17e3
  • 6.17e3
79.35
  • 79.35
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
6.30e3
  • 6.30e3
  • 8.09e3
  • 8.17e3
  • 1.31e4
  • 1.57e4
78.90
  • 78.90
  • 72.91
  • 72.65
  • 56.18
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.99e3
  • 6.99e3
76.59
  • 76.59
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.07e3
  • 7.07e3
76.34
  • 76.34
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
7.12e3
  • 7.12e3
  • 7.87e3
76.17
  • 76.17
  • 73.67
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.77e3
  • 7.77e3
73.98
  • 73.98
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.78e3
  • 7.78e3
  • 1.42e4
73.96
  • 73.96
  • 52.48
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.91e3
  • 7.91e3
73.53
  • 73.53
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
8.11e3
  • 8.11e3
  • 9.32e3
72.84
  • 72.84
  • 68.80
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.20e3
  • 8.20e3
72.55
  • 72.55
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
8.82e3
  • 8.82e3
  • 9.85e3
70.48
  • 70.48
  • 67.01
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.41e3
  • 9.41e3
68.48
  • 68.48
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.51e3
  • 9.51e3
68.15
  • 68.15
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.78
  • 63.78
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.24
  • 63.24
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.33
  • 57.33
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.06
  • 47.06
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

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