D. rerio Gene: si:ch211-87j1.4 - ENSDARG00000039951 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039951
Namesi:ch211-87j1.4
Descriptionsi:ch211-87j1.4 [Source:ZFIN;Acc:ZDB-GENE-131127-49]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
1.06e4
  • 1.06e4
  • 1.62e4
  • 1.81e4
  • 1.82e4
  • 1.83e4
64.38
  • 64.38
  • 45.66
  • 39.30
  • 38.98
  • 38.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.07e4
  • 1.07e4
  • 1.45e4
64.10
  • 64.10
  • 51.47
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.83
  • 63.83
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.24e4
  • 1.24e4
58.58
  • 58.58
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.58
  • 51.58
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.36
  • 44.36
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.03
  • 44.03
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.60
  • 41.60
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
40.97
  • 40.97
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.30
  • 40.30
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.26
  • 39.26
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.82e4
  • 1.82e4
  • 1.96e4
39.13
  • 39.13
  • 34.27
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
36.17
  • 36.17
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.74
  • 30.74
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
28.91
  • 28.91
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.22e4
  • 2.22e4
25.71
  • 25.71
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLFP102071
EnsemblENSDARG00000039951 (si:ch211-87j1.4)
Uniprot/SPTREMBLF1QR58, F1QR58_DANRE
ZFINZDB-GENE-131127-49 (si:ch211-87j1.4)

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