D. rerio Gene: ptp4a3 - ENSDARG00000039997 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039997
Nameptp4a3
Descriptionprotein tyrosine phosphatase type IVA, member 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2220]
OrganismDanio rerio (zebrafish)
Synonym(s)fc54b05, fv52d11, prl-3, wu:fc54b05, wu:fv52d11, zgc:77109

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
257
  • 257
99.14
  • 99.14
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
265
  • 265
  • 9.96e3
99.12
  • 99.12
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
286
  • 286
99.05
  • 99.05
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
424
  • 424
98.58
  • 98.58
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
442
  • 442
  • 626
98.52
  • 98.52
  • 97.91
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
507
  • 507
98.31
  • 98.31
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
577
  • 577
  • 1.21e3
  • 1.32e3
  • 1.41e3
  • 2.01e3
98.07
  • 98.07
  • 95.96
  • 95.59
  • 95.29
  • 93.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
816
  • 816
97.27
  • 97.27
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
909
  • 909
96.96
  • 96.96
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.23e3
  • 1.23e3
  • 2.81e3
  • 7.47e3
  • 1.12e4
  • 1.49e4
  • 1.49e4
95.87
  • 95.87
  • 90.60
  • 75.00
  • 62.50
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.41e3
  • 1.41e3
95.28
  • 95.28
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:00072368 cell stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.53e3
  • 1.53e3
  • 1.92e3
  • 2.95e3
  • 3.24e3
  • 3.25e3
  • 3.44e3
  • 3.59e3
  • 3.81e3
  • 4.79e3
  • 5.50e3
  • 5.50e3
  • 6.55e3
  • 6.79e3
  • 7.58e3
  • 7.69e3
  • 9.34e3
  • 1.05e4
  • 1.43e4
  • 1.44e4
  • 1.50e4
94.88
  • 94.88
  • 93.58
  • 90.12
  • 89.16
  • 89.11
  • 88.50
  • 87.98
  • 87.25
  • 83.98
  • 81.60
  • 81.58
  • 78.09
  • 77.27
  • 74.62
  • 74.26
  • 68.74
  • 64.69
  • 51.99
  • 51.82
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.70e3
  • 1.70e3
  • 2.04e3
94.33
  • 94.33
  • 93.17
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.77e3
  • 1.77e3
94.08
  • 94.08
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
1.93e3
  • 1.93e3
  • 2.21e3
  • 2.46e3
  • 2.65e3
  • 3.07e3
  • 3.28e3
  • 3.43e3
  • 3.56e3
  • 3.57e3
  • 5.37e3
93.53
  • 93.53
  • 92.60
  • 91.77
  • 91.12
  • 89.74
  • 89.03
  • 88.52
  • 88.08
  • 88.04
  • 82.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
2.16e3
  • 2.16e3
  • 2.24e3
  • 2.56e3
92.77
  • 92.77
  • 92.49
  • 91.44
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.34e3
  • 2.34e3
92.16
  • 92.16
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.38e3
  • 2.38e3
92.05
  • 92.05
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.60e3
  • 2.60e3
91.28
  • 91.28
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
2.61e3
  • 2.61e3
  • 4.74e3
  • 5.48e3
  • 8.11e3
  • 8.21e3
  • 8.45e3
91.25
  • 91.25
  • 84.14
  • 81.67
  • 72.84
  • 72.52
  • 71.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
2.71e3
  • 2.71e3
  • 1.19e4
90.92
  • 90.92
  • 60.00
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
2.90e3
  • 2.90e3
  • 3.00e3
  • 1.22e4
90.29
  • 90.29
  • 89.96
  • 59.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.91e3
  • 2.91e3
90.26
  • 90.26
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.09e3
  • 3.09e3
89.67
  • 89.67
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.22e3
  • 3.22e3
89.21
  • 89.21
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.26e3
  • 3.26e3
89.10
  • 89.10
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.28e3
  • 3.28e3
89.02
  • 89.02
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.39e3
  • 3.39e3
88.64
  • 88.64
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
4.57e3
  • 4.57e3
  • 4.63e3
  • 7.27e3
  • 9.99e3
  • 1.39e4
84.70
  • 84.70
  • 84.49
  • 75.67
  • 66.55
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.03e3
  • 6.03e3
79.80
  • 79.80
AEIR
  • AEIR
UBERON:0000160intestine
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 7.83e3
  • 1.24e4
75.00
  • 75.00
  • 73.78
  • 58.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
8.89e3
  • 8.89e3
  • 1.31e4
70.25
  • 70.25
  • 56.24
AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
  • 1.12e4
66.67
  • 66.67
  • 62.50
AEIR
  • AEIR
  • AEIR
UBERON:2000033intermediate cell mass of mesoderm
  • ZFS:0000031Pharyngula:Prim-25
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0002541germ ring
  • ZFS:0000019Gastrula:Shield
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0003062primitive knot
  • ZFS:0000019Gastrula:Shield
1.22e4
  • 1.22e4
59.08
  • 59.08
AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
1.23e4
  • 1.23e4
  • 1.23e4
  • 1.40e4
  • 1.41e4
  • 1.49e4
58.80
  • 58.80
  • 58.80
  • 53.10
  • 52.92
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008897fin
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
1.30e4
  • 1.30e4
  • 1.49e4
56.53
  • 56.53
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000031Pharyngula:Prim-25
1.32e4
  • 1.32e4
55.86
  • 55.86
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000031Pharyngula:Prim-25
1.42e4
  • 1.42e4
52.60
  • 52.60
AEIR
  • AEIR
UBERON:0001043esophagus
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001007digestive system
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001602medial rectus extraocular muscle
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001981blood vessel
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004467musculature of pharynx
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2002200hypobranchial muscle
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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