Gene: slc13a5b - ENSDARG00000039999 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000039999
Name	slc13a5b
Description	solute carrier family 13 (sodium-dependent citrate transporter), member 5b [Source:ZFIN;Acc:ZDB-GENE-130530-605]
Organism	Danio rerio (zebrafish)
Synonym(s)	slc13a5, zmp:0000000602
Orthologs(s)	16 orthologs
Paralog(s)	5 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	1.60e4 1.60e4 1.73e4	46.47 46.47 42.09	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 4 stages ZFS:0000029Pharyngula:Prim-5 UBERON:0000068embryo stage ZFS:0000037Larval:Day 5 UBERON:0004707pharyngula stage	1.62e4 1.62e4 1.84e4 2.03e4 2.42e4	45.77 45.77 38.37 32.16 18.90	AEIR AEIR AEIR AEIR AEIR
UBERON:0000948	heart	[+] 1 stage ZFS:0000036Larval:Day 4	1.63e4 1.63e4	45.32 45.32	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.67e4 1.67e4	44.12 44.12	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.69e4 1.69e4	43.48 43.48	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	1.83e4 1.83e4 2.21e4	38.65 38.65 25.96	AEIR AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.83e4 1.83e4	38.60 38.60	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.99e4 1.99e4	33.44 33.44	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	2.01e4 2.01e4 2.32e4	32.81 32.81 22.24	AEIR AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Bilateria	7 species Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	16 genes FBgn0036816 Indy FBgn0064119 CG33934 FBgn0260466 Indy-2 WBGene00003517 nac-1 WBGene00003519 nac-3 FBgn0087844 GF10804 FBgn0094653 GF17635 FBgn0136713 GI13959 FBgn0145172 GI22444 FBgn0190837 GD19335 FBgn0190838 GD19336 FBgn0198273 GJ11006 FBgn0200961 GJ13740 FBgn0239285 GE22053 FBgn0242707 GE25645 FBgn0242708 GE25646	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000039999.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Vertebrata	2 genes ENSDARG00000053853 slc13a2 ENSDARG00000077691 slc13a5a	Compare expression	[+]
Eumetazoa	3 genes ENSDARG00000053853 slc13a2 ENSDARG00000069478 slc13a3 ENSDARG00000077691 slc13a5a	Compare expression	[+]
Eukaryota	5 genes ENSDARG00000045638 slc13a1 ENSDARG00000053853 slc13a2 ENSDARG00000059053 slc13a4 ENSDARG00000069478 slc13a3 ENSDARG00000077691 slc13a5a	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000039999.

Cross-references

Ensembl	ENSDARG00000039999 (slc13a5b)
ZFIN	ZDB-GENE-130530-605 (slc13a5b)
EMBL	CR853282, CU861670
Uniprot/SPTREMBL	E7F3R9, E7F3R9_DANRE, X1WE78, X1WE78_DANRE