D. rerio Gene: slc13a5b - ENSDARG00000039999 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039999
Nameslc13a5b
Descriptionsolute carrier family 13 (sodium-dependent citrate transporter), member 5b [Source:ZFIN;Acc:ZDB-GENE-130530-605]
OrganismDanio rerio (zebrafish)
Synonym(s)slc13a5, zmp:0000000602
Orthologs(s)16 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.60e4
  • 1.60e4
  • 1.73e4
46.47
  • 46.47
  • 42.09
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
1.62e4
  • 1.62e4
  • 1.84e4
  • 2.03e4
  • 2.42e4
45.77
  • 45.77
  • 38.37
  • 32.16
  • 18.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.63e4
  • 1.63e4
45.32
  • 45.32
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.12
  • 44.12
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.48
  • 43.48
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
  • 2.21e4
38.65
  • 38.65
  • 25.96
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.83e4
  • 1.83e4
38.60
  • 38.60
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.44
  • 33.44
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.01e4
  • 2.01e4
  • 2.32e4
32.81
  • 32.81
  • 22.24
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Orthology information comes from OMA : ENSDARG00000039999.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata2 genesCompare expression
Eumetazoa3 genesCompare expression
Eukaryota5 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000039999.

Cross-references

EnsemblENSDARG00000039999 (slc13a5b)
ZFINZDB-GENE-130530-605 (slc13a5b)
EMBLCR853282, CU861670
Uniprot/SPTREMBLE7F3R9, E7F3R9_DANRE, X1WE78, X1WE78_DANRE

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