D. rerio Gene: PKHD1L1 (1 to many) - ENSDARG00000040004 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000040004
NamePKHD1L1 (1 to many)
Descriptionsi:ch211-244a23.1 [Source:ZFIN;Acc:ZDB-GENE-060503-789]
OrganismDanio rerio (zebrafish)
Synonym(s)pkhd-l2
Orthologs(s)15 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • UBERON:0000066fully formed stage
4.73e3
  • 4.73e3
84.16
  • 84.16
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.66
  • 54.66
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.19
  • 45.19
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.34
  • 41.34
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.87
  • 39.87
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.29
  • 39.29
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
1.83e4
  • 1.83e4
38.62
  • 38.62
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.56
  • 33.56
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
2.08e4
  • 2.08e4
  • 2.34e4
  • 2.43e4
30.41
  • 30.41
  • 21.75
  • 18.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.10e4
  • 2.10e4
  • 2.13e4
29.70
  • 29.70
  • 28.64
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.17e4
  • 2.17e4
27.47
  • 27.47
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000040004.

Cross-references

EnsemblENSDARG00000040004 (PKHD1L1 (1 to many))
HGNCHGNC:20313 (PKHD1L1 (1 to many))
ZFINZDB-GENE-060503-789 (si:ch211-244a23.1)
EMBLBX649562
Uniprot/SPTREMBLA8E7R5, A8E7R5_DANRE, F1QXX9, F1QXX9_DANRE, I3IS60, I3IS60_DANRE

Do not show this banner again