Gene: PKHD1L1 (1 to many) - ENSDARG00000040004 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000040004
Name	PKHD1L1 (1 to many)
Description	si:ch211-244a23.1 [Source:ZFIN;Acc:ZDB-GENE-060503-789]
Organism	Danio rerio (zebrafish)
Synonym(s)	pkhd-l2
Orthologs(s)	15 orthologs
Paralog(s)	1 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000033	head	[+] 1 stage UBERON:0000066fully formed stage	4.73e3 4.73e3	84.16 84.16	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.35e4 1.35e4	54.66 54.66	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.64e4 1.64e4	45.19 45.19	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.75e4 1.75e4	41.34 41.34	AEIR AEIR
UBERON:0002199	integument	[+] 1 stage UBERON:0000066fully formed stage	1.77e4 1.77e4	40.77 40.77	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.80e4 1.80e4	39.87 39.87	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.81e4 1.81e4	39.29 39.29	AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 1 stage ZFS:0000037Larval:Day 5	1.83e4 1.83e4	38.62 38.62	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.98e4 1.98e4	33.56 33.56	AEIR AEIR
UBERON:0000922	embryo	[+] 3 stages UBERON:0004707pharyngula stage ZFS:0000037Larval:Day 5 UBERON:0000068embryo stage	2.08e4 2.08e4 2.34e4 2.43e4	30.41 30.41 21.75 18.69	AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	2.10e4 2.10e4 2.13e4	29.70 29.70 28.64	AEIR AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	2.17e4 2.17e4	27.47 27.47	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

Affymetrix data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

Affymetrix data: ArrayExpress, GEO
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	15 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Xenopus tropicalis (western clawed frog)	15 genes ENSG00000205038 PKHD1L1 ENSMUSG00000038725 Pkhd1l1 ENSPTRG00000030951 PKHD1L1 ENSGGOG00000014869 PKHD1L1 ENSMMUG00000000975 PKHD1L1 ENSRNOG00000004398 Pkhd1l1 ENSSSCG00000006025 PKHD1L1 ENSECAG00000000972 PKHD1L1 ENSOCUG00000004688 PKHD1L1 ENSCAFG00000024786 PKHD1L1 ENSFCAG00000023829 PKHD1L1 ENSCPOG00000019466 PKHD1L1 ENSEEUG00000004593 PKHD1L1 ENSMODG00000004891 PKHD1L1 ENSXETG00000017994 pkhd1l1	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000040004.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Otophysi	1 gene ENSDARG00000091116 pkhd1l1	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000040004.

Cross-references

Ensembl	ENSDARG00000040004 (PKHD1L1 (1 to many))
HGNC	HGNC:20313 (PKHD1L1 (1 to many))
ZFIN	ZDB-GENE-060503-789 (si:ch211-244a23.1)
EMBL	BX649562
Uniprot/SPTREMBL	A8E7R5, A8E7R5_DANRE, F1QXX9, F1QXX9_DANRE, I3IS60, I3IS60_DANRE