D. rerio Gene: tcf19l - ENSDARG00000040036 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000040036
Nametcf19l
Descriptiontranscription factor 19 (SC1), like [Source:ZFIN;Acc:ZDB-GENE-060324-2]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
3.02e3
  • 3.02e3
  • 5.34e3
89.90
  • 89.90
  • 82.13
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.76e3
  • 4.76e3
84.06
  • 84.06
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
4.87e3
  • 4.87e3
83.71
  • 83.71
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
5.68e3
  • 5.68e3
  • 6.45e3
80.97
  • 80.97
  • 78.40
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.22e3
  • 6.22e3
79.18
  • 79.18
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.67e3
  • 8.67e3
70.96
  • 70.96
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
8.73e3
  • 8.73e3
  • 9.25e3
  • 1.30e4
  • 1.66e4
  • 1.97e4
70.77
  • 70.77
  • 69.04
  • 56.48
  • 44.43
  • 34.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.86e3
  • 8.86e3
70.33
  • 70.33
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.09e3
  • 9.09e3
69.56
  • 69.56
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.52
  • 66.52
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.06e4
  • 1.06e4
  • 1.83e4
64.43
  • 64.43
  • 38.58
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.43
  • 60.43
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.21e4
  • 1.21e4
59.34
  • 59.34
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.22e4
  • 1.22e4
59.19
  • 59.19
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.65
  • 58.65
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.25
  • 58.25
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.82
  • 57.82
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.84
  • 48.84
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.51
  • 42.51
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
1.76e4
  • 1.76e4
41.10
  • 41.10
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.28
  • 36.28
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.37
  • 32.37
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000040036 (tcf19l)
ZFINZDB-GENE-060324-2 (tcf19l)
EMBLCABZ01029821
Uniprot/SPTREMBLE7FD52, E7FD52_DANRE

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