D. rerio Gene: cldn1 - ENSDARG00000040045 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000040045
Namecldn1
Descriptionclaudin 1 [Source:ZFIN;Acc:ZDB-GENE-010328-11]
OrganismDanio rerio (zebrafish)
Synonym(s)cldn19
Paralog(s)11 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
516
  • 516
98.28
  • 98.28
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
547
  • 547
98.17
  • 98.17
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.32e3
  • 1.32e3
  • 1.54e3
  • 1.83e3
  • 2.46e3
  • 4.11e3
  • 4.28e3
  • 5.15e3
  • 8.64e3
  • 1.11e4
  • 1.28e4
95.57
  • 95.57
  • 94.84
  • 93.89
  • 91.75
  • 86.23
  • 85.69
  • 82.77
  • 71.07
  • 62.75
  • 57.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.36e3
  • 1.36e3
  • 2.31e3
95.44
  • 95.44
  • 92.25
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.45e3
  • 1.45e3
  • 2.59e3
  • 4.52e3
95.14
  • 95.14
  • 91.32
  • 84.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
2.01e3
  • 2.01e3
  • 2.43e3
  • 2.49e3
  • 2.50e3
  • 3.98e3
  • 4.43e3
  • 8.30e3
  • 1.09e4
  • 1.27e4
  • 1.29e4
93.26
  • 93.26
  • 91.85
  • 91.68
  • 91.62
  • 86.67
  • 85.18
  • 72.22
  • 63.36
  • 57.62
  • 56.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.50e3
  • 2.50e3
  • 2.83e3
91.63
  • 91.63
  • 90.52
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.54e3
  • 4.54e3
  • 1.94e4
84.81
  • 84.81
  • 34.97
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.60e3
  • 4.60e3
  • 1.84e4
84.60
  • 84.60
  • 38.55
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.56e3
  • 6.56e3
78.04
  • 78.04
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.77e3
  • 6.77e3
77.34
  • 77.34
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.89e3
  • 6.89e3
76.94
  • 76.94
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.95e3
  • 8.95e3
70.04
  • 70.04
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.04e3
  • 9.04e3
69.75
  • 69.75
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.23e3
  • 9.23e3
69.10
  • 69.10
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.06
  • 61.06
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.69
  • 54.69
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.58
  • 44.58
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.71e4
  • 1.71e4
  • 1.75e4
42.61
  • 42.61
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.72
  • 41.72
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.60
  • 30.60
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.09e4
  • 2.09e4
29.92
  • 29.92
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.19e4
  • 2.19e4
26.51
  • 26.51
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata11 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000040045.

Cross-references

EnsemblENSDARG00000040045 (cldn1)
ZFINZDB-GENE-010328-11 (cldn1)
EMBLCABZ01111921, CABZ01111922
Uniprot/SPTREMBLF1R6Z2, F1R6Z2_DANRE

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