Gene: snai2 - ENSDARG00000040046 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000040046
Name	snai2
Description	snail family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030326-6]
Organism	Danio rerio (zebrafish)
Synonym(s)	cb147, cb355, id:ibd5003, sb:cb355, sb:cb569, slug, wu:fb83e12, wu:fd19g11, zgc:92564

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0005419	pectoral appendage bud	[+] 3 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites	712 712 830 830	97.62 97.62 97.22 97.22	AEIR AEIR AEIR AEIR
UBERON:0005886	post-hyoid pharyngeal arch skeleton	[+] 7 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000032Pharyngula:High-pec ZFS:0000033Hatching:Long-pec ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	712 712 747 747 879 879 2.36e3 2.36e3	97.62 97.62 97.50 97.50 97.06 97.06 92.10 92.10	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000307	blastula	[+] 5 stages ZFS:0000015Blastula:Dome ZFS:0000016Blastula:30%-epiboly ZFS:0000011Blastula:1k-cell ZFS:0000014Blastula:Sphere ZFS:0000009Blastula:256-cell	775 775 1.32e3 7.81e3 8.93e3 1.19e4	97.41 97.41 95.59 73.85 70.11 60.19	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:2000083	ventral mesoderm	[+] 4 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000023Segmentation:1-4 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites	879 879 6.97e3 6.97e3 7.47e3	97.06 97.06 76.66 76.66 74.99	AEIR AEIR AEIR AEIR AEIR
UBERON:0003055	periderm	[+] 7 stages ZFS:0000023Segmentation:1-4 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000026Segmentation:14-19 somites ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	934 934 996 996 2.49e3 2.64e3 2.99e3 2.99e3	96.88 96.88 96.67 96.67 91.67 91.17 90.00 90.00	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0007269	pectoral appendage musculature	[+] 4 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000032Pharyngula:High-pec ZFS:0000033Hatching:Long-pec	934 934 934 7.08e3 7.08e3	96.88 96.88 96.88 76.30 76.30	AEIR AEIR AEIR AEIR AEIR
UBERON:0009620	tail bud paraxial mesoderm	[+] 1 stage ZFS:0000027Segmentation:20-25 somites	1.22e3 1.22e3	95.93 95.93	AEIR AEIR
UBERON:0010170	region of neural crest	[+] 7 stages ZFS:0000025Segmentation:10-13 somites ZFS:0000028Segmentation:26+ somites ZFS:0000027Segmentation:20-25 somites ZFS:0000023Segmentation:1-4 somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000024Segmentation:5-9 somites ZFS:0000026Segmentation:14-19 somites	1.24e3 1.24e3 1.36e3 1.49e3 1.99e3 2.49e3 2.99e3 4.48e3	95.84 95.84 95.46 95.00 93.33 91.67 90.00 85.00	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002329	somite	[+] 7 stages ZFS:0000023Segmentation:1-4 somites ZFS:0000026Segmentation:14-19 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	1.36e3 1.36e3 2.06e3 2.49e3 2.98e3 3.74e3 3.74e3 4.98e3	95.45 95.45 93.10 91.66 90.02 87.49 87.49 83.32	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 19 stages ZFS:0000028Segmentation:26+ somites ZFS:0000019Gastrula:Shield ZFS:0000026Segmentation:14-19 somites ZFS:0000030Pharyngula:Prim-15 ZFS:0000033Hatching:Long-pec ZFS:0000029Pharyngula:Prim-5 ZFS:0000024Segmentation:5-9 somites ZFS:0000036Larval:Day 4 ZFS:0000020Gastrula:75%-epiboly ZFS:0000042Juvenile:Days 30-44 ZFS:0000040Larval:Days 14-20 ZFS:0000021Gastrula:90%-epiboly UBERON:0000106zygote stage ZFS:0000037Larval:Day 5 ZFS:0000022Gastrula:Bud UBERON:0000066fully formed stage UBERON:0000068embryo stage UBERON:0000104life cycle UBERON:0000109gastrula stage	1.42e3 1.42e3 2.45e3 4.35e3 4.77e3 5.01e3 5.45e3 5.83e3 5.86e3 6.20e3 6.39e3 7.56e3 9.16e3 9.77e3 9.88e3 1.02e4 1.41e4 1.44e4 1.47e4 1.49e4	95.24 95.24 91.80 85.42 84.02 83.21 81.74 80.48 80.38 79.23 78.60 74.70 69.33 67.27 66.91 65.87 52.87 51.82 50.90 49.99	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:4000164	caudal fin	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000033Hatching:Long-pec	1.83e3 1.83e3 2.30e3	93.89 93.89 92.31	AEIR AEIR AEIR
UBERON:0000926	mesoderm	[+] 7 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000023Segmentation:1-4 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	1.87e3 1.87e3 2.99e3 2.99e3 2.99e3 4.98e3 4.98e3 5.60e3	93.75 93.75 90.00 90.00 90.00 83.33 83.33 81.24	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002328	notochord	[+] 4 stages ZFS:0000023Segmentation:1-4 somites ZFS:0000026Segmentation:14-19 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites	2.24e3 2.24e3 2.39e3 2.72e3 2.72e3	92.50 92.50 92.00 90.91 90.91	AEIR AEIR AEIR AEIR AEIR
UBERON:0004734	gastrula	[+] 6 stages ZFS:0000019Gastrula:Shield UBERON:0000109gastrula stage ZFS:0000017Gastrula:50%-epiboly ZFS:0000022Gastrula:Bud ZFS:0000021Gastrula:90%-epiboly ZFS:0000020Gastrula:75%-epiboly	2.27e3 2.27e3 4.12e3 4.67e3 8.80e3 9.21e3 1.04e4	92.39 92.39 86.21 84.36 70.53 69.15 65.29	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0003075	neural plate	[+] 3 stages ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000023Segmentation:1-4 somites	2.36e3 2.36e3 2.36e3 3.56e3	92.10 92.10 92.10 88.09	AEIR AEIR AEIR AEIR
UBERON:0003059	presomitic mesoderm	[+] 3 stages ZFS:0000024Segmentation:5-9 somites ZFS:0000023Segmentation:1-4 somites ZFS:0000025Segmentation:10-13 somites	2.72e3 2.72e3 2.85e3 3.97e3	90.91 90.91 90.47 86.72	AEIR AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 10 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000025Segmentation:10-13 somites UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5 UBERON:0000068embryo stage ZFS:0000024Segmentation:5-9 somites ZFS:0000033Hatching:Long-pec ZFS:0000030Pharyngula:Prim-15 ZFS:0000037Larval:Day 5 ZFS:0000031Pharyngula:Prim-25	2.76e3 2.76e3 3.31e3 3.71e3 4.11e3 4.63e3 4.76e3 5.45e3 6.70e3 6.75e3 6.99e3	90.75 90.75 88.93 87.58 86.23 84.50 84.05 81.74 77.55 77.40 76.60	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	2.96e3 2.96e3	90.08 90.08	AEIR AEIR
UBERON:0005253	head mesenchyme	[+] 3 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	2.99e3 2.99e3 2.99e3 2.99e3	90.00 90.00 90.00 90.00	AEIR AEIR AEIR AEIR
UBERON:0003073	lens placode	[+] 1 stage ZFS:0000026Segmentation:14-19 somites	3.32e3 3.32e3	88.89 88.89	AEIR AEIR
UBERON:0003082	myotome	[+] 3 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	3.32e3 3.32e3 3.32e3 3.74e3	88.89 88.89 88.89 87.49	AEIR AEIR AEIR AEIR
UBERON:2000164	ventral mesenchyme	[+] 4 stages ZFS:0000032Pharyngula:High-pec ZFS:0000033Hatching:Long-pec ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	3.73e3 3.73e3 3.73e3 5.34e3 5.34e3	87.50 87.50 87.50 82.14 82.14	AEIR AEIR AEIR AEIR AEIR
UBERON:0001003	skin epidermis	[+] 5 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	3.74e3 3.74e3 3.74e3 4.27e3 5.27e3 5.60e3	87.49 87.49 87.49 85.71 82.35 81.24	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	3.98e3 3.98e3	86.69 86.69	AEIR AEIR
UBERON:0000948	heart	[+] 3 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage ZFS:0000035Larval:Protruding-mouth	3.99e3 3.99e3 1.11e4 1.21e4	86.65 86.65 62.96 59.59	AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 3 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5 ZFS:0000035Larval:Protruding-mouth	4.83e3 4.83e3 5.44e3 5.48e3	83.83 83.83 81.80 81.66	AEIR AEIR AEIR AEIR
UBERON:0000955	brain	[+] 2 stages ZFS:0000031Pharyngula:Prim-25 UBERON:0000066fully formed stage	4.88e3 4.88e3 1.68e4	83.65 83.65 43.65	AEIR AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	4.96e3 4.96e3	83.41 83.41	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	5.89e3 5.89e3 1.11e4	80.27 80.27 62.97	AEIR AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	6.36e3 6.36e3	78.71 78.71	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	7.19e3 7.19e3	75.94 75.94	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	7.42e3 7.42e3	75.16 75.16	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	7.73e3 7.73e3	74.11 74.11	AEIR AEIR
UBERON:0004535	cardiovascular system	[+] 3 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites	7.97e3 7.97e3 8.54e3 8.54e3	73.32 73.32 71.42 71.42	AEIR AEIR AEIR AEIR
ZFA:0000092	axis (Danio)	[+] 6 stages ZFS:0000019Gastrula:Shield ZFS:0000020Gastrula:75%-epiboly ZFS:0000022Gastrula:Bud ZFS:0000017Gastrula:50%-epiboly ZFS:0000018Gastrula:Germ-ring ZFS:0000021Gastrula:90%-epiboly	8.30e3 8.30e3 8.30e3 8.30e3 8.79e3 8.79e3 8.79e3	72.21 72.21 72.21 72.21 70.57 70.57 70.57	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	8.61e3 8.61e3	71.16 71.16	AEIR AEIR
UBERON:0007010	cleaving embryo	[+] 1 stage ZFS:0000005Cleavage:16-cell	9.00e3 9.00e3	69.86 69.86	AEIR AEIR
UBERON:0001049	neural tube	[+] 3 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites	9.10e3 9.10e3 9.71e3 9.71e3	69.55 69.55 67.48 67.48	AEIR AEIR AEIR AEIR
UBERON:0002240	spinal cord	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	9.61e3 9.61e3 9.71e3 9.71e3 1.02e4 1.09e4	67.83 67.83 67.48 67.48 65.89 63.61	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	9.80e3 9.80e3	67.19 67.19	AEIR AEIR
UBERON:0004880	chordamesoderm	[+] 1 stage ZFS:0000022Gastrula:Bud	9.96e3 9.96e3	66.66 66.66	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.07e4 1.07e4	64.20 64.20	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.08e4 1.08e4	63.76 63.76	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.12e4 1.12e4	62.64 62.64	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.20e4 1.20e4	59.83 59.83	AEIR AEIR
UBERON:0000966	retina	[+] 3 stages ZFS:0000033Hatching:Long-pec ZFS:0000031Pharyngula:Prim-25 UBERON:0000066fully formed stage	1.31e4 1.31e4 1.35e4 1.52e4	56.11 56.11 54.80 49.03	AEIR AEIR AEIR AEIR
UBERON:0000019	camera-type eye	[+] 1 stage UBERON:0000066fully formed stage	1.46e4 1.46e4	51.26 51.26	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.46e4 1.46e4	51.10 51.10	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

Affymetrix data: Bgee
EST data: Bgee
In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

Affymetrix data: ArrayExpress, GEO
EST data: UniGene
In situ hybridization data: ZFIN
RNA-Seq data: GEO

Cross-references

EMBL	BC086969, CR354603
Ensembl	ENSDARG00000040046 (snai2)
Uniprot/SPTREMBL	Q5PQY5, Q5PQY5_DANRE
ZFIN	ZDB-GENE-030326-6 (snai2)