D. rerio Gene: snai2 - ENSDARG00000040046 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000040046
Namesnai2
Descriptionsnail family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030326-6]
OrganismDanio rerio (zebrafish)
Synonym(s)cb147, cb355, id:ibd5003, sb:cb355, sb:cb569, slug, wu:fb83e12, wu:fd19g11, zgc:92564

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005419pectoral appendage bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
712
  • 712
  • 830
  • 830
97.62
  • 97.62
  • 97.22
  • 97.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
712
  • 712
  • 747
  • 747
  • 879
  • 879
  • 2.36e3
  • 2.36e3
97.62
  • 97.62
  • 97.50
  • 97.50
  • 97.06
  • 97.06
  • 92.10
  • 92.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
775
  • 775
  • 1.32e3
  • 7.81e3
  • 8.93e3
  • 1.19e4
97.41
  • 97.41
  • 95.59
  • 73.85
  • 70.11
  • 60.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
879
  • 879
  • 6.97e3
  • 6.97e3
  • 7.47e3
97.06
  • 97.06
  • 76.66
  • 76.66
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
934
  • 934
  • 996
  • 996
  • 2.49e3
  • 2.64e3
  • 2.99e3
  • 2.99e3
96.88
  • 96.88
  • 96.67
  • 96.67
  • 91.67
  • 91.17
  • 90.00
  • 90.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
934
  • 934
  • 934
  • 7.08e3
  • 7.08e3
96.88
  • 96.88
  • 96.88
  • 76.30
  • 76.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.22e3
  • 1.22e3
95.93
  • 95.93
AEIR
  • AEIR
UBERON:0010170region of neural crest
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
1.24e3
  • 1.24e3
  • 1.36e3
  • 1.49e3
  • 1.99e3
  • 2.49e3
  • 2.99e3
  • 4.48e3
95.84
  • 95.84
  • 95.46
  • 95.00
  • 93.33
  • 91.67
  • 90.00
  • 85.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.36e3
  • 1.36e3
  • 2.06e3
  • 2.49e3
  • 2.98e3
  • 3.74e3
  • 3.74e3
  • 4.98e3
95.45
  • 95.45
  • 93.10
  • 91.66
  • 90.02
  • 87.49
  • 87.49
  • 83.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000109gastrula stage
1.42e3
  • 1.42e3
  • 2.45e3
  • 4.35e3
  • 4.77e3
  • 5.01e3
  • 5.45e3
  • 5.83e3
  • 5.86e3
  • 6.20e3
  • 6.39e3
  • 7.56e3
  • 9.16e3
  • 9.77e3
  • 9.88e3
  • 1.02e4
  • 1.41e4
  • 1.44e4
  • 1.47e4
  • 1.49e4
95.24
  • 95.24
  • 91.80
  • 85.42
  • 84.02
  • 83.21
  • 81.74
  • 80.48
  • 80.38
  • 79.23
  • 78.60
  • 74.70
  • 69.33
  • 67.27
  • 66.91
  • 65.87
  • 52.87
  • 51.82
  • 50.90
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.83e3
  • 1.83e3
  • 2.30e3
93.89
  • 93.89
  • 92.31
AEIR
  • AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.87e3
  • 1.87e3
  • 2.99e3
  • 2.99e3
  • 2.99e3
  • 4.98e3
  • 4.98e3
  • 5.60e3
93.75
  • 93.75
  • 90.00
  • 90.00
  • 90.00
  • 83.33
  • 83.33
  • 81.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
2.24e3
  • 2.24e3
  • 2.39e3
  • 2.72e3
  • 2.72e3
92.50
  • 92.50
  • 92.00
  • 90.91
  • 90.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
2.27e3
  • 2.27e3
  • 4.12e3
  • 4.67e3
  • 8.80e3
  • 9.21e3
  • 1.04e4
92.39
  • 92.39
  • 86.21
  • 84.36
  • 70.53
  • 69.15
  • 65.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
2.36e3
  • 2.36e3
  • 2.36e3
  • 3.56e3
92.10
  • 92.10
  • 92.10
  • 88.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
2.72e3
  • 2.72e3
  • 2.85e3
  • 3.97e3
90.91
  • 90.91
  • 90.47
  • 86.72
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
2.76e3
  • 2.76e3
  • 3.31e3
  • 3.71e3
  • 4.11e3
  • 4.63e3
  • 4.76e3
  • 5.45e3
  • 6.70e3
  • 6.75e3
  • 6.99e3
90.75
  • 90.75
  • 88.93
  • 87.58
  • 86.23
  • 84.50
  • 84.05
  • 81.74
  • 77.55
  • 77.40
  • 76.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.96e3
  • 2.96e3
90.08
  • 90.08
AEIR
  • AEIR
UBERON:0005253head mesenchyme
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
2.99e3
  • 2.99e3
  • 2.99e3
  • 2.99e3
90.00
  • 90.00
  • 90.00
  • 90.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003073lens placode
  • ZFS:0000026Segmentation:14-19 somites
3.32e3
  • 3.32e3
88.89
  • 88.89
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
3.32e3
  • 3.32e3
  • 3.32e3
  • 3.74e3
88.89
  • 88.89
  • 88.89
  • 87.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000164ventral mesenchyme
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
3.73e3
  • 3.73e3
  • 3.73e3
  • 5.34e3
  • 5.34e3
87.50
  • 87.50
  • 87.50
  • 82.14
  • 82.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
3.74e3
  • 3.74e3
  • 3.74e3
  • 4.27e3
  • 5.27e3
  • 5.60e3
87.49
  • 87.49
  • 87.49
  • 85.71
  • 82.35
  • 81.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.98e3
  • 3.98e3
86.69
  • 86.69
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
3.99e3
  • 3.99e3
  • 1.11e4
  • 1.21e4
86.65
  • 86.65
  • 62.96
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
4.83e3
  • 4.83e3
  • 5.44e3
  • 5.48e3
83.83
  • 83.83
  • 81.80
  • 81.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.88e3
  • 4.88e3
  • 1.68e4
83.65
  • 83.65
  • 43.65
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.96e3
  • 4.96e3
83.41
  • 83.41
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.89e3
  • 5.89e3
  • 1.11e4
80.27
  • 80.27
  • 62.97
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.36e3
  • 6.36e3
78.71
  • 78.71
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.19e3
  • 7.19e3
75.94
  • 75.94
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.42e3
  • 7.42e3
75.16
  • 75.16
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.73e3
  • 7.73e3
74.11
  • 74.11
AEIR
  • AEIR
UBERON:0004535cardiovascular system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
7.97e3
  • 7.97e3
  • 8.54e3
  • 8.54e3
73.32
  • 73.32
  • 71.42
  • 71.42
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
8.30e3
  • 8.30e3
  • 8.30e3
  • 8.30e3
  • 8.79e3
  • 8.79e3
  • 8.79e3
72.21
  • 72.21
  • 72.21
  • 72.21
  • 70.57
  • 70.57
  • 70.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.61e3
  • 8.61e3
71.16
  • 71.16
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.00e3
  • 9.00e3
69.86
  • 69.86
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.10e3
  • 9.10e3
  • 9.71e3
  • 9.71e3
69.55
  • 69.55
  • 67.48
  • 67.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.61e3
  • 9.61e3
  • 9.71e3
  • 9.71e3
  • 1.02e4
  • 1.09e4
67.83
  • 67.83
  • 67.48
  • 67.48
  • 65.89
  • 63.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.80e3
  • 9.80e3
67.19
  • 67.19
AEIR
  • AEIR
UBERON:0004880chordamesoderm
  • ZFS:0000022Gastrula:Bud
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.20
  • 64.20
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.76
  • 63.76
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.64
  • 62.64
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.83
  • 59.83
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
  • 1.35e4
  • 1.52e4
56.11
  • 56.11
  • 54.80
  • 49.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.26
  • 51.26
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.10
  • 51.10
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC086969, CR354603
EnsemblENSDARG00000040046 (snai2)
Uniprot/SPTREMBLQ5PQY5, Q5PQY5_DANRE
ZFINZDB-GENE-030326-6 (snai2)

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