D. rerio Gene: prim1 - ENSDARG00000040163 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000040163
Nameprim1
Descriptionprimase, DNA, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-990603-6]
OrganismDanio rerio (zebrafish)
Synonym(s)fa12c04, wu:fa12c04

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.74e3
  • 1.74e3
94.17
  • 94.17
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.09e3
  • 2.09e3
  • 4.32e3
  • 1.04e4
  • 1.20e4
  • 1.21e4
  • 1.36e4
93.02
  • 93.02
  • 85.54
  • 65.19
  • 59.98
  • 59.64
  • 54.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
2.12e3
  • 2.12e3
  • 2.58e3
  • 3.05e3
  • 4.11e3
  • 4.12e3
  • 4.48e3
  • 4.91e3
  • 5.17e3
  • 6.69e3
  • 7.05e3
92.91
  • 92.91
  • 91.35
  • 89.79
  • 86.24
  • 86.20
  • 85.00
  • 83.56
  • 82.70
  • 77.59
  • 76.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.91e3
  • 2.91e3
90.25
  • 90.25
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
2.98e3
  • 2.98e3
  • 3.54e3
  • 4.52e3
  • 4.56e3
  • 4.79e3
  • 4.91e3
90.03
  • 90.03
  • 88.13
  • 84.88
  • 84.73
  • 83.97
  • 83.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
3.43e3
  • 3.43e3
  • 4.31e3
  • 4.80e3
  • 8.50e3
  • 8.59e3
88.52
  • 88.52
  • 85.58
  • 83.95
  • 71.54
  • 71.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
3.90e3
  • 3.90e3
86.96
  • 86.96
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
3.97e3
  • 3.97e3
  • 4.04e3
  • 5.26e3
  • 5.37e3
  • 6.26e3
  • 6.31e3
  • 6.72e3
  • 6.77e3
  • 7.28e3
  • 7.37e3
  • 7.37e3
  • 8.44e3
  • 9.56e3
  • 1.18e4
86.71
  • 86.71
  • 86.47
  • 82.39
  • 82.01
  • 79.03
  • 78.87
  • 77.49
  • 77.34
  • 75.64
  • 75.32
  • 75.31
  • 71.74
  • 67.98
  • 60.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.18e3
  • 4.18e3
86.02
  • 86.02
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.22e3
  • 4.22e3
85.87
  • 85.87
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.40e3
  • 4.40e3
  • 1.44e4
85.28
  • 85.28
  • 51.62
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.73e3
  • 4.73e3
  • 1.39e4
84.17
  • 84.17
  • 53.53
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.99e3
  • 4.99e3
83.29
  • 83.29
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.44e3
  • 5.44e3
81.80
  • 81.80
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.53e3
  • 5.53e3
81.50
  • 81.50
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.80e3
  • 5.80e3
80.58
  • 80.58
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000066fully formed stage
6.38e3
  • 6.38e3
  • 1.12e4
  • 1.70e4
78.63
  • 78.63
  • 62.50
  • 43.20
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.63e3
  • 6.63e3
77.81
  • 77.81
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.12e3
  • 7.12e3
76.16
  • 76.16
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.15e3
  • 7.15e3
76.06
  • 76.06
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.55e3
  • 7.55e3
74.73
  • 74.73
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
7.66e3
  • 7.66e3
74.36
  • 74.36
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.71e3
  • 7.71e3
74.20
  • 74.20
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
7.78e3
  • 7.78e3
  • 8.21e3
  • 9.55e3
73.96
  • 73.96
  • 72.53
  • 68.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.99e3
  • 7.99e3
73.24
  • 73.24
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.58e3
  • 8.58e3
71.28
  • 71.28
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
8.65e3
  • 8.65e3
  • 9.13e3
  • 1.08e4
  • 1.23e4
71.04
  • 71.04
  • 69.43
  • 63.87
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.71e3
  • 8.71e3
  • 8.71e3
  • 1.03e4
  • 1.12e4
70.82
  • 70.82
  • 70.82
  • 65.37
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.82e3
  • 8.82e3
70.46
  • 70.46
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
9.05e3
  • 9.05e3
  • 1.11e4
69.70
  • 69.70
  • 62.99
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.17e3
  • 9.17e3
69.31
  • 69.31
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
9.19e3
  • 9.19e3
  • 1.03e4
  • 1.10e4
  • 1.17e4
69.22
  • 69.22
  • 65.37
  • 63.32
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000033intermediate cell mass of mesoderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 1.07e4
  • 1.18e4
66.65
  • 66.65
  • 64.27
  • 60.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.68
  • 65.68
AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.03e4
  • 1.03e4
  • 1.03e4
  • 1.18e4
  • 1.18e4
65.61
  • 65.61
  • 65.61
  • 60.50
  • 60.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.04e4
  • 1.04e4
  • 1.05e4
  • 1.20e4
  • 1.26e4
65.19
  • 65.19
  • 64.98
  • 59.98
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.96
  • 64.96
AEIR
  • AEIR
UBERON:0000178blood
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.07e4
  • 1.07e4
  • 1.07e4
  • 1.12e4
64.27
  • 64.27
  • 64.27
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.10e4
  • 1.10e4
  • 1.10e4
  • 1.23e4
  • 1.23e4
63.14
  • 63.14
  • 63.14
  • 58.80
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.73
  • 60.73
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.18e4
  • 1.18e4
  • 1.23e4
  • 1.23e4
60.50
  • 60.50
  • 58.80
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000098proliferative region
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
UBERON:0004749blastodisc
  • UBERON:00072368 cell stage
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.45
  • 39.45
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCR381647
EnsemblENSDARG00000040163 (prim1)
Uniprot/SPTREMBLF1QKT6, F1QKT6_DANRE
ZFINZDB-GENE-990603-6 (prim1)

Do not show this banner again