D. rerio Gene: syncrip - ENSDARG00000040184 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000040184
Namesyncrip
Descriptionsynaptotagmin binding, cytoplasmic RNA interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-4862]
OrganismDanio rerio (zebrafish)
Synonym(s)nsap1, wu:fe02c03, wu:fe47h09
Orthologs(s)21 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
132
  • 132
  • 168
99.56
  • 99.56
  • 99.44
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
210
  • 210
  • 286
  • 292
  • 423
  • 573
99.30
  • 99.30
  • 99.04
  • 99.03
  • 98.59
  • 98.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
223
  • 223
  • 226
99.26
  • 99.26
  • 99.24
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
330
  • 330
98.90
  • 98.90
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
400
  • 400
  • 905
98.66
  • 98.66
  • 96.97
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
447
  • 447
98.51
  • 98.51
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
524
  • 524
  • 850
98.25
  • 98.25
  • 97.16
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
560
  • 560
  • 568
98.13
  • 98.13
  • 98.10
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
563
  • 563
98.12
  • 98.12
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
587
  • 587
98.04
  • 98.04
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
589
  • 589
  • 1.43e4
98.03
  • 98.03
  • 52.21
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
597
  • 597
98.00
  • 98.00
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
601
  • 601
97.99
  • 97.99
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
637
  • 637
97.87
  • 97.87
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
659
  • 659
97.80
  • 97.80
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
728
  • 728
97.56
  • 97.56
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
794
  • 794
97.34
  • 97.34
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
824
  • 824
97.25
  • 97.25
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
840
  • 840
97.19
  • 97.19
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
846
  • 846
  • 880
  • 4.27e3
  • 4.41e3
  • 7.33e3
  • 1.37e4
  • 1.49e4
97.17
  • 97.17
  • 97.06
  • 85.71
  • 85.22
  • 75.45
  • 54.18
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
919
  • 919
96.93
  • 96.93
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
923
  • 923
96.91
  • 96.91
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.07e3
  • 1.07e3
96.43
  • 96.43
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.07e3
  • 1.07e3
96.43
  • 96.43
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.12e3
  • 1.12e3
96.26
  • 96.26
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.21e3
  • 1.21e3
95.94
  • 95.94
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.25e3
  • 1.25e3
95.82
  • 95.82
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 6.89e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.54e3
  • 8.71e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
78.57
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 76.92
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 71.43
  • 71.41
  • 70.82
  • 70.57
  • 70.57
  • 69.99
  • 69.98
  • 69.43
  • 69.43
  • 69.43
  • 67.48
  • 66.66
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
  • 1.42e4
55.82
  • 55.82
  • 52.57
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species20 genesCompare expression
Bilateria20 species21 genesCompare expression

Orthology information comes from OMA : ENSDARG00000040184.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000040184.

Cross-references

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