D. rerio Gene: scrt1b - ENSDARG00000040214 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000040214
Namescrt1b
Descriptionscratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:113646

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
5.40e3
  • 5.40e3
81.92
  • 81.92
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.69e3
  • 5.69e3
  • 1.76e4
80.94
  • 80.94
  • 41.09
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
7.75e3
  • 7.75e3
74.06
  • 74.06
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
8.89e3
  • 8.89e3
  • 9.72e3
  • 1.56e4
  • 1.88e4
  • 2.08e4
70.23
  • 70.23
  • 67.46
  • 47.67
  • 36.90
  • 30.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000035Larval:Protruding-mouth
8.96e3
  • 8.96e3
  • 9.10e3
  • 9.25e3
  • 9.61e3
  • 1.05e4
  • 1.10e4
  • 1.20e4
  • 1.39e4
69.98
  • 69.98
  • 69.55
  • 69.03
  • 67.83
  • 64.98
  • 63.14
  • 59.98
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
9.02e3
  • 9.02e3
  • 9.24e3
69.81
  • 69.81
  • 69.05
AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.10e3
  • 9.10e3
  • 9.51e3
  • 1.14e4
  • 1.16e4
  • 1.18e4
  • 1.23e4
  • 1.26e4
69.55
  • 69.55
  • 68.16
  • 61.75
  • 61.09
  • 60.39
  • 58.67
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
9.44e3
  • 9.44e3
  • 9.44e3
  • 1.08e4
  • 1.12e4
  • 1.18e4
  • 1.18e4
  • 1.25e4
68.40
  • 68.40
  • 68.40
  • 63.87
  • 62.48
  • 60.50
  • 60.39
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000027Segmentation:20-25 somites
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000035Larval:Protruding-mouth
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.42e4
  • 1.42e4
52.42
  • 52.42
AEIR
  • AEIR
UBERON:2007003ventro-caudal cluster
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000203pallium
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
  • 1.49e4
49.99
  • 49.99
  • 49.97
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.69e4
  • 1.69e4
43.32
  • 43.32
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.16e4
  • 2.16e4
27.71
  • 27.71
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX569792
EnsemblENSDARG00000040214 (scrt1b)
Uniprot/SPTREMBLF1R2G9, F1R2G9_DANRE
ZFINZDB-GENE-050327-72 (scrt1b)

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