D. rerio Gene: atp1a1a.5 - ENSDARG00000040252 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000040252
Nameatp1a1a.5
DescriptionATPase, Na+/K+ transporting, alpha 1a polypeptide, tandem duplicate 5 [Source:ZFIN;Acc:ZDB-GENE-020501-1]
OrganismDanio rerio (zebrafish)
Synonym(s)cb709

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.17e3
  • 2.17e3
92.73
  • 92.73
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.01e3
  • 4.01e3
86.56
  • 86.56
AEIR
  • AEIR
CL:0000319mucus secreting cell
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 8.04e3
  • 8.04e3
  • 8.04e3
  • 9.96e3
  • 9.96e3
75.00
  • 75.00
  • 73.07
  • 73.07
  • 73.07
  • 66.66
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.71e3
  • 9.96e3
  • 1.08e4
74.99
  • 74.99
  • 70.57
  • 69.99
  • 69.99
  • 67.48
  • 66.66
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.91e3
  • 7.91e3
  • 8.40e3
  • 8.96e3
73.52
  • 73.52
  • 71.86
  • 69.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
8.30e3
  • 8.30e3
72.21
  • 72.21
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.37e3
  • 8.37e3
71.99
  • 71.99
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.50e3
  • 8.50e3
71.53
  • 71.53
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.96e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.44e3
  • 1.12e4
  • 1.12e4
  • 1.14e4
  • 1.21e4
69.98
  • 69.98
  • 69.98
  • 69.43
  • 68.40
  • 62.48
  • 62.48
  • 61.75
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
9.44e3
  • 9.44e3
68.40
  • 68.40
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
9.75e3
  • 9.75e3
  • 1.05e4
  • 1.07e4
  • 1.12e4
  • 1.15e4
  • 1.18e4
  • 1.20e4
67.37
  • 67.37
  • 64.97
  • 64.26
  • 62.48
  • 61.34
  • 60.50
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.04e4
  • 1.04e4
  • 2.30e4
65.26
  • 65.26
  • 23.07
AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.07e4
  • 1.07e4
  • 1.10e4
  • 1.18e4
  • 1.20e4
64.27
  • 64.27
  • 63.32
  • 60.50
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.17e4
  • 1.17e4
  • 1.20e4
60.84
  • 60.84
  • 59.98
AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.18e4
  • 1.18e4
  • 1.23e4
  • 1.25e4
  • 1.25e4
60.50
  • 60.50
  • 58.80
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.40
  • 56.40
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.35e4
  • 1.35e4
  • 1.54e4
54.95
  • 54.95
  • 48.58
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.71
  • 52.71
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.44e4
  • 1.44e4
  • 1.67e4
  • 1.84e4
  • 1.97e4
  • 2.09e4
51.64
  • 51.64
  • 44.06
  • 38.34
  • 34.16
  • 29.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
50.96
  • 50.96
AEIR
  • AEIR
UBERON:0001840semicircular canal
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.91
  • 43.91
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.82
  • 40.82
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.28
  • 37.28
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.77
  • 31.77
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBC162215, BC162231, CU185242
EnsemblENSDARG00000040252 (atp1a1a.5)
Uniprot/SPTREMBLB3DFZ2, B3DFZ2_DANRE
ZFINZDB-GENE-020501-1 (atp1a1a.5)

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