D. rerio Gene: onecutl - ENSDARG00000040253 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000040253
Nameonecutl
Descriptionone cut domain, family member, like [Source:ZFIN;Acc:ZDB-GENE-020531-1]
OrganismDanio rerio (zebrafish)
Synonym(s)id:ibd5005, onecut, onecut l, onecut1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000530primary neuron
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
1.87e3
  • 1.87e3
  • 1.87e3
  • 4.98e3
93.75
  • 93.75
  • 93.75
  • 83.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000026Segmentation:14-19 somites
2.30e3
  • 2.30e3
92.31
  • 92.31
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
2.80e3
  • 2.80e3
  • 2.99e3
  • 2.99e3
  • 3.73e3
  • 4.98e3
  • 5.34e3
  • 5.34e3
  • 6.40e3
90.62
  • 90.62
  • 90.00
  • 90.00
  • 87.50
  • 83.33
  • 82.14
  • 82.14
  • 78.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
2.99e3
  • 2.99e3
  • 3.73e3
  • 4.98e3
  • 4.98e3
  • 5.34e3
  • 5.50e3
  • 5.60e3
  • 6.64e3
90.00
  • 90.00
  • 87.50
  • 83.33
  • 83.32
  • 82.14
  • 81.57
  • 81.24
  • 77.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
2.99e3
  • 2.99e3
  • 2.99e3
  • 3.32e3
  • 3.98e3
  • 4.67e3
  • 5.34e3
  • 5.43e3
90.00
  • 90.00
  • 90.00
  • 88.89
  • 86.66
  • 84.37
  • 82.14
  • 81.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
3.45e3
  • 3.45e3
  • 5.23e3
  • 5.23e3
  • 5.60e3
  • 5.60e3
  • 6.11e3
  • 7.47e3
  • 7.97e3
88.46
  • 88.46
  • 82.49
  • 82.49
  • 81.24
  • 81.24
  • 79.53
  • 74.99
  • 73.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
3.56e3
  • 3.56e3
  • 3.93e3
  • 3.93e3
  • 5.27e3
  • 5.50e3
  • 5.81e3
  • 5.81e3
88.09
  • 88.09
  • 86.84
  • 86.84
  • 82.35
  • 81.57
  • 80.55
  • 80.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
3.74e3
  • 3.74e3
  • 3.93e3
  • 3.93e3
87.49
  • 87.49
  • 86.84
  • 86.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
4.15e3
  • 4.15e3
  • 5.50e3
  • 5.60e3
  • 5.85e3
  • 6.50e3
  • 6.64e3
  • 6.79e3
  • 7.03e3
86.11
  • 86.11
  • 81.57
  • 81.24
  • 80.42
  • 78.25
  • 77.77
  • 77.26
  • 76.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
4.27e3
  • 4.27e3
85.71
  • 85.71
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
4.27e3
  • 4.27e3
  • 4.48e3
  • 5.20e3
  • 5.23e3
  • 5.98e3
  • 5.98e3
  • 6.41e3
  • 7.08e3
85.71
  • 85.71
  • 84.99
  • 82.60
  • 82.49
  • 79.99
  • 79.99
  • 78.55
  • 76.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
4.98e3
  • 4.98e3
  • 5.27e3
  • 5.27e3
  • 5.60e3
  • 6.15e3
  • 6.54e3
  • 6.54e3
83.33
  • 83.33
  • 82.35
  • 82.35
  • 81.24
  • 79.40
  • 78.12
  • 78.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
5.23e3
  • 5.23e3
  • 5.99e3
  • 1.74e4
82.49
  • 82.49
  • 79.95
  • 41.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
5.23e3
  • 5.23e3
  • 5.23e3
  • 5.87e3
  • 6.11e3
  • 6.11e3
  • 6.15e3
  • 6.29e3
82.49
  • 82.49
  • 82.49
  • 80.34
  • 79.53
  • 79.53
  • 79.40
  • 78.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
5.27e3
  • 5.27e3
  • 6.56e3
  • 9.66e3
  • 9.81e3
  • 1.05e4
  • 1.56e4
  • 1.56e4
  • 1.75e4
82.37
  • 82.37
  • 78.03
  • 67.65
  • 67.15
  • 64.75
  • 47.86
  • 47.74
  • 41.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
5.27e3
  • 5.27e3
  • 5.27e3
  • 5.27e3
82.35
  • 82.35
  • 82.35
  • 82.35
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.01e3
  • 6.01e3
79.87
  • 79.87
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
6.29e3
  • 6.29e3
  • 6.29e3
  • 7.12e3
78.94
  • 78.94
  • 78.94
  • 76.18
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.10e4
  • 1.10e4
63.18
  • 63.18
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.17e4
  • 1.17e4
  • 1.47e4
  • 1.75e4
60.76
  • 60.76
  • 50.94
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.31e4
  • 1.31e4
  • 1.47e4
56.01
  • 56.01
  • 50.78
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.72
  • 55.72
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.72
  • 51.72
AEIR
  • AEIR
ZFA:0000821primary neuron hindbrain (Danio)
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.50e4
  • 1.50e4
  • 1.68e4
49.81
  • 49.81
  • 43.83
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.08
  • 49.08
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.73
  • 46.73
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.92
  • 45.92
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.68
  • 37.68
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.28e4
  • 2.28e4
23.77
  • 23.77
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.53e4
  • 2.53e4
15.17
  • 15.17
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX248517
EnsemblENSDARG00000040253 (onecutl)
Uniprot/SPTREMBLA2BF65, A2BF65_DANRE
ZFINZDB-GENE-020531-1 (onecutl)

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