D. rerio Gene: rpp38 - ENSDARG00000040350 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000040350
Namerpp38
Descriptionribonuclease P/MRP 38 subunit [Source:ZFIN;Acc:ZDB-GENE-040718-258]
OrganismDanio rerio (zebrafish)
Synonym(s)fc10d08, wu:fc10d08, zgc:92924

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
956
  • 956
  • 2.33e3
  • 2.86e3
  • 3.03e3
  • 7.39e3
96.80
  • 96.80
  • 92.21
  • 90.42
  • 89.87
  • 75.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.57e3
  • 1.57e3
94.75
  • 94.75
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.83e3
  • 1.83e3
  • 1.50e4
93.88
  • 93.88
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.93e3
  • 1.93e3
93.52
  • 93.52
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • UBERON:0000068embryo stage
  • UBERON:0000109gastrula stage
  • ZFS:0000049segmentation
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
2.12e3
  • 2.12e3
  • 4.41e3
  • 4.51e3
  • 4.60e3
  • 4.88e3
  • 4.98e3
  • 5.81e3
  • 6.53e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.96e3
  • 8.96e3
  • 9.83e3
  • 1.01e4
  • 1.05e4
  • 1.07e4
  • 1.08e4
  • 1.10e4
  • 1.22e4
  • 1.38e4
  • 1.49e4
  • 1.49e4
  • 1.50e4
  • 1.50e4
92.91
  • 92.91
  • 85.24
  • 84.90
  • 84.59
  • 83.67
  • 83.33
  • 80.54
  • 78.14
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 73.52
  • 69.99
  • 69.99
  • 67.09
  • 66.34
  • 64.77
  • 64.24
  • 63.83
  • 63.25
  • 59.26
  • 53.84
  • 49.99
  • 49.95
  • 49.92
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
2.20e3
  • 2.20e3
  • 3.85e3
  • 4.36e3
  • 4.41e3
  • 5.58e3
  • 7.93e3
92.65
  • 92.65
  • 87.12
  • 85.39
  • 85.22
  • 81.31
  • 73.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.32e3
  • 2.32e3
92.24
  • 92.24
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.02e3
  • 3.02e3
89.88
  • 89.88
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.29e3
  • 4.29e3
85.63
  • 85.63
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.35e3
  • 4.35e3
85.42
  • 85.42
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.36e3
  • 4.36e3
85.40
  • 85.40
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.68e3
  • 5.68e3
80.98
  • 80.98
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.80e3
  • 5.80e3
80.58
  • 80.58
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.80e3
  • 5.80e3
80.58
  • 80.58
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.88e3
  • 5.88e3
80.33
  • 80.33
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.12e3
  • 6.12e3
79.50
  • 79.50
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
6.28e3
  • 6.28e3
  • 7.85e3
  • 9.82e3
78.98
  • 78.98
  • 73.73
  • 67.12
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.98e3
  • 6.98e3
76.62
  • 76.62
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
7.06e3
  • 7.06e3
  • 8.43e3
  • 8.47e3
  • 8.59e3
  • 9.31e3
  • 9.53e3
  • 1.06e4
  • 1.11e4
  • 1.40e4
  • 1.42e4
76.35
  • 76.35
  • 71.78
  • 71.65
  • 71.23
  • 68.83
  • 68.10
  • 64.37
  • 62.99
  • 53.29
  • 52.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.34e3
  • 7.34e3
75.41
  • 75.41
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.71e3
  • 7.71e3
  • 9.26e3
74.19
  • 74.19
  • 68.99
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
8.08e3
  • 8.08e3
  • 1.50e4
72.94
  • 72.94
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.82e3
  • 8.82e3
70.46
  • 70.46
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.93e3
  • 8.93e3
70.12
  • 70.12
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
9.04e3
  • 9.04e3
  • 1.48e4
69.73
  • 69.73
  • 50.36
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.05
  • 66.05
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
1.04e4
  • 1.04e4
  • 1.26e4
  • 1.49e4
65.08
  • 65.08
  • 57.74
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.08e4
  • 1.08e4
  • 1.28e4
  • 1.48e4
63.99
  • 63.99
  • 57.02
  • 50.35
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.56
  • 63.56
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.27
  • 63.27
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.85
  • 62.85
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
  • 1.18e4
62.02
  • 62.02
  • 60.33
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.78
  • 60.78
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX322614
EnsemblENSDARG00000040350 (rpp38)
Uniprot/SPTREMBLF1QS85, F1QS85_DANRE
ZFINZDB-GENE-040718-258 (rpp38)

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