Gene: ftr89 - ENSDARG00000040536 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000040536
Name	ftr89
Description	finTRIM family, member 89 [Source:ZFIN;Acc:ZDB-GENE-131122-82]
Organism	Danio rerio (zebrafish)
Synonym(s)	si:ch211-276c2.5
Orthologs(s)	86 orthologs
Paralog(s)	55 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	2.12e3 2.12e3	92.92 92.92	AEIR AEIR
UBERON:0000948	heart	[+] 1 stage UBERON:0000066fully formed stage	1.08e4 1.08e4	63.80 63.80	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000019Gastrula:Shield	1.10e4 1.10e4 1.12e4	63.15 63.15 62.50	AEIR AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.11e4 1.11e4	62.77 62.77	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.18e4 1.18e4	60.44 60.44	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	1.18e4 1.18e4	60.43 60.43	AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000015Blastula:Dome	1.29e4 1.29e4	56.81 56.81	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.32e4 1.32e4	55.74 55.74	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.46e4 1.46e4	51.26 51.26	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.63e4 1.63e4	45.58 45.58	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.65e4 1.65e4	44.61 44.61	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.67e4 1.67e4	44.03 44.03	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	1.67e4 1.67e4	43.96 43.96	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.72e4 1.72e4	42.35 42.35	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.76e4 1.76e4	41.02 41.02	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.87e4 1.87e4	37.30 37.30	AEIR AEIR
UBERON:0000033	head	[+] 1 stage UBERON:0000066fully formed stage	1.89e4 1.89e4	36.82 36.82	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	1.95e4 1.95e4 2.24e4	34.67 34.67 25.16	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 3 stages UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5 UBERON:0000068embryo stage	2.03e4 2.03e4 2.04e4 2.28e4	31.95 31.95 31.68 23.72	AEIR AEIR AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	2.06e4 2.06e4	31.08 31.08	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.30e4 2.30e4	22.90 22.90	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	1 species Xenopus tropicalis (western clawed frog)	86 genes ENSXETG00000000623 ENSXETG00000001634 ENSXETG00000003407 ENSXETG00000003805 ENSXETG00000004310 ENSXETG00000004666 ENSXETG00000004676 ENSXETG00000004897 ENSXETG00000005079 ENSXETG00000005296 ENSXETG00000005758 ENSXETG00000007381 XB-GENE-5895314 ENSXETG00000007602 ENSXETG00000007603 ENSXETG00000008323 ENSXETG00000008344 ENSXETG00000010351 ENSXETG00000011166 ENSXETG00000011715 ENSXETG00000011762 ENSXETG00000012121 XB-GENE-5729976 ENSXETG00000012437 ENSXETG00000012798 ENSXETG00000015245 ENSXETG00000015940 ENSXETG00000016323 ENSXETG00000016333 ENSXETG00000017033 ENSXETG00000017038 ENSXETG00000018403 ENSXETG00000018423 ENSXETG00000019145 ENSXETG00000019297 XB-GENE-5802720 ENSXETG00000019740 ENSXETG00000019741 ENSXETG00000019897 ENSXETG00000020506 ENSXETG00000021009 ENSXETG00000022498 ENSXETG00000024320 ENSXETG00000024802 ENSXETG00000025233 ENSXETG00000025410 ENSXETG00000025968 XB-GENE-5945738 ENSXETG00000025969 XB-GENE-5846549 ENSXETG00000025970 ENSXETG00000026013 ENSXETG00000026378 XB-GENE-5729272 ENSXETG00000026687 ENSXETG00000027431 ENSXETG00000027437 ENSXETG00000027506 ENSXETG00000027817 ENSXETG00000027841 ENSXETG00000027953 ENSXETG00000030128 ENSXETG00000030152 ENSXETG00000030223 ENSXETG00000030282 ENSXETG00000030334 ENSXETG00000030502 ENSXETG00000030576 ENSXETG00000030699 ENSXETG00000030762 ENSXETG00000030821 ENSXETG00000030861 ENSXETG00000031090 ENSXETG00000031370 ENSXETG00000031612 ENSXETG00000031616 ENSXETG00000031730 ENSXETG00000031950 ENSXETG00000032059 ENSXETG00000032087 ENSXETG00000032127 ENSXETG00000032550 ENSXETG00000032673 ENSXETG00000032780 ENSXETG00000032890 ENSXETG00000033078 ENSXETG00000033332 ENSXETG00000033672 ENSXETG00000033822 ENSXETG00000034071 ENSXETG00000034101 ENSXETG00000034196	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000040536.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Otophysi	6 genes ENSDARG00000026704 ftr72 ENSDARG00000076093 ftr76 ENSDARG00000095298 ftr73 ENSDARG00000097373 ftr90 ENSDARG00000097679 ftr88 ENSDARG00000098004 ftr91	Compare expression	[+]
Clupeocephala	52 genes ENSDARG00000003909 ftr01 ENSDARG00000008396 ftr24 ENSDARG00000009161 ftr55 ENSDARG00000018506 ftr06 ENSDARG00000026704 ftr72 ENSDARG00000029105 ftr51 ENSDARG00000030954 ftr56 ENSDARG00000032043 ftr16 ENSDARG00000038646 ftr11 ENSDARG00000039852 ftr93 ENSDARG00000041220 ftr53 ENSDARG00000052971 ftr19 ENSDARG00000053293 ftr14 ENSDARG00000053366 ftr12 ENSDARG00000053450 ftr06 ENSDARG00000054153 ftr50 ENSDARG00000055476 TRIM29 (1 to many) ENSDARG00000055520 ftr61 ENSDARG00000067985 ftr23 ENSDARG00000069514 TRIM29 (1 to many) ENSDARG00000071238 ftr58 ENSDARG00000073735 ftr95 ENSDARG00000074118 ftr15 ENSDARG00000074360 ftr57 ENSDARG00000075355 ftr35 ENSDARG00000076093 ftr76 ENSDARG00000076106 ftr43 ENSDARG00000076969 ftr22 ENSDARG00000078065 ftr96 ENSDARG00000078446 ftr07 ENSDARG00000079412 ftr02 ENSDARG00000079537 ftr13 ENSDARG00000079614 ftr38 ENSDARG00000087057 ftr34 ENSDARG00000089388 ftr37 ENSDARG00000092745 ftr29 ENSDARG00000092961 ftr26 ENSDARG00000093651 ftr25 ENSDARG00000094131 ftr19 ENSDARG00000095032 ftr33 ENSDARG00000095298 ftr73 ENSDARG00000095448 ftr30 ENSDARG00000095678 ftr36 ENSDARG00000095864 ftr59 ENSDARG00000097373 ftr90 ENSDARG00000097679 ftr88 ENSDARG00000098004 ftr91 ENSDARG00000098820 ftr67 ENSDARG00000099754 ftr94 ENSDARG00000099940 ftr42 ENSDARG00000100250 ftr41 ENSDARG00000101514 TRIM29 (1 to many)	Compare expression	[+]
Euteleostomi	55 genes ENSDARG00000003909 ftr01 ENSDARG00000005327 ftr66 ENSDARG00000008396 ftr24 ENSDARG00000009161 ftr55 ENSDARG00000018506 ftr06 ENSDARG00000026704 ftr72 ENSDARG00000029105 ftr51 ENSDARG00000030954 ftr56 ENSDARG00000032043 ftr16 ENSDARG00000038646 ftr11 ENSDARG00000039852 ftr93 ENSDARG00000041220 ftr53 ENSDARG00000043850 ftr54 ENSDARG00000052971 ftr19 ENSDARG00000053293 ftr14 ENSDARG00000053366 ftr12 ENSDARG00000053450 ftr06 ENSDARG00000054153 ftr50 ENSDARG00000055476 TRIM29 (1 to many) ENSDARG00000055520 ftr61 ENSDARG00000067661 TRIM29 (1 to many) ENSDARG00000067985 ftr23 ENSDARG00000069514 TRIM29 (1 to many) ENSDARG00000071238 ftr58 ENSDARG00000073735 ftr95 ENSDARG00000074118 ftr15 ENSDARG00000074360 ftr57 ENSDARG00000075355 ftr35 ENSDARG00000076093 ftr76 ENSDARG00000076106 ftr43 ENSDARG00000076969 ftr22 ENSDARG00000078065 ftr96 ENSDARG00000078446 ftr07 ENSDARG00000079412 ftr02 ENSDARG00000079537 ftr13 ENSDARG00000079614 ftr38 ENSDARG00000087057 ftr34 ENSDARG00000089388 ftr37 ENSDARG00000092745 ftr29 ENSDARG00000092961 ftr26 ENSDARG00000093651 ftr25 ENSDARG00000094131 ftr19 ENSDARG00000095032 ftr33 ENSDARG00000095298 ftr73 ENSDARG00000095448 ftr30 ENSDARG00000095678 ftr36 ENSDARG00000095864 ftr59 ENSDARG00000097373 ftr90 ENSDARG00000097679 ftr88 ENSDARG00000098004 ftr91 ENSDARG00000098820 ftr67 ENSDARG00000099754 ftr94 ENSDARG00000099940 ftr42 ENSDARG00000100250 ftr41 ENSDARG00000101514 TRIM29 (1 to many)	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000040536.

Cross-references

Ensembl	ENSDARG00000040536 (ftr89)
ZFIN	ZDB-GENE-131122-82 (ftr89)
EMBL	CR848665, CR853294
Uniprot/SPTREMBL	E7F5R5, E7F5R5_DANRE, X1WCE3, X1WCE3_DANRE