D. rerio Gene: phykpl - ENSDARG00000040566 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000040566
Namephykpl
Description5-phosphohydroxy-L-lysine phospho-lyase [Source:ZFIN;Acc:ZDB-GENE-051127-33]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:123007
Orthologs(s)23 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.23e3
  • 5.23e3
82.48
  • 82.48
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.34e3
  • 5.34e3
82.12
  • 82.12
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.58e3
  • 5.58e3
81.31
  • 81.31
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.60e3
  • 5.60e3
81.25
  • 81.25
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
5.67e3
  • 5.67e3
  • 9.62e3
81.02
  • 81.02
  • 67.79
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.56e3
  • 6.56e3
78.04
  • 78.04
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.61e3
  • 6.61e3
77.89
  • 77.89
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.06e3
  • 7.06e3
76.38
  • 76.38
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.25e3
  • 7.25e3
75.72
  • 75.72
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
7.90e3
  • 7.90e3
  • 1.17e4
73.55
  • 73.55
  • 60.87
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.27e3
  • 8.27e3
72.33
  • 72.33
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
8.29e3
  • 8.29e3
  • 9.75e3
72.23
  • 72.23
  • 67.34
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.52e3
  • 8.52e3
71.48
  • 71.48
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.63e3
  • 8.63e3
71.09
  • 71.09
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.84e3
  • 8.84e3
70.40
  • 70.40
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
9.74e3
  • 9.74e3
  • 1.02e4
  • 1.04e4
  • 1.05e4
  • 1.08e4
67.38
  • 67.38
  • 65.72
  • 65.18
  • 64.91
  • 63.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.90e3
  • 9.90e3
66.84
  • 66.84
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.09e4
  • 1.09e4
  • 1.11e4
63.66
  • 63.66
  • 62.67
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.08
  • 63.08
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.05
  • 61.05
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.20e4
  • 1.20e4
59.77
  • 59.77
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
  • 1.22e4
59.75
  • 59.75
  • 59.20
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.25
  • 58.25
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.40
  • 53.40
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species16 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000040566.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Opisthokonta2 genesCompare expression
Eukaryota3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000040566.

Cross-references

EnsemblENSDARG00000040566 (phykpl)
ZFINZDB-GENE-051127-33 (phykpl)
EMBLBC110111, CR847931
Uniprot/SPTREMBLQ2YDQ8, Q2YDQ8_DANRE

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