D. rerio Gene: grik1b - ENSDARG00000040627 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000040627
Namegrik1b
Descriptionglutamate receptor, ionotropic, kainate 1b [Source:ZFIN;Acc:ZDB-GENE-070821-1]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-181d7.4, zmp:0000000604
Orthologs(s)18 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
3.76e3
  • 3.76e3
87.43
  • 87.43
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
  • 1.66e4
61.67
  • 61.67
  • 44.47
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.69
  • 58.69
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.30e4
  • 1.30e4
  • 1.51e4
  • 2.20e4
  • 2.21e4
  • 2.29e4
56.40
  • 56.40
  • 49.50
  • 26.32
  • 25.99
  • 23.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.52e4
  • 1.52e4
  • 2.25e4
49.19
  • 49.19
  • 24.83
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.63e4
  • 1.63e4
45.46
  • 45.46
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.70e4
  • 1.70e4
43.18
  • 43.18
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.85
  • 42.85
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.55
  • 40.55
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.78e4
  • 1.78e4
40.45
  • 40.45
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.69
  • 31.69
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
2.20e4
  • 2.20e4
26.38
  • 26.38
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.44e4
  • 2.44e4
18.34
  • 18.34
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression
Eumetazoa4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000040627.

Cross-references

EnsemblENSDARG00000040627 (grik1b)
ZFINZDB-GENE-070821-1 (grik1b)
Uniprot/SPTREMBLX1WEQ0, X1WEQ0_DANRE

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