D. rerio Gene: rnf11b - ENSDARG00000040635 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000040635
Namernf11b
Descriptionring finger protein 11b [Source:ZFIN;Acc:ZDB-GENE-050913-69]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:114095
Orthologs(s)6 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.08e3
  • 1.08e3
  • 1.16e4
  • 1.32e4
  • 1.51e4
96.39
  • 96.39
  • 61.27
  • 55.94
  • 49.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.56e3
  • 3.56e3
88.10
  • 88.10
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
4.49e3
  • 4.49e3
  • 6.97e3
  • 7.84e3
  • 8.19e3
  • 1.22e4
84.96
  • 84.96
  • 76.66
  • 73.76
  • 72.57
  • 59.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.54e3
  • 6.54e3
  • 8.64e3
78.10
  • 78.10
  • 71.07
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.56e3
  • 6.56e3
78.04
  • 78.04
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.62e3
  • 6.62e3
77.85
  • 77.85
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.79e3
  • 6.79e3
77.28
  • 77.28
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:00072322 cell stage
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000106zygote stage
  • UBERON:0000068embryo stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
6.79e3
  • 6.79e3
  • 8.96e3
  • 8.96e3
  • 1.06e4
  • 1.49e4
  • 1.58e4
  • 1.59e4
  • 1.59e4
  • 1.59e4
  • 1.59e4
  • 1.61e4
  • 1.62e4
  • 1.62e4
  • 1.64e4
  • 1.65e4
  • 1.71e4
  • 1.72e4
77.27
  • 77.27
  • 69.99
  • 69.99
  • 64.51
  • 50.20
  • 46.99
  • 46.83
  • 46.79
  • 46.68
  • 46.67
  • 46.18
  • 45.78
  • 45.60
  • 45.03
  • 44.64
  • 42.84
  • 42.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.86e3
  • 6.86e3
77.04
  • 77.04
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.90e3
  • 6.90e3
76.89
  • 76.89
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
7.20e3
  • 7.20e3
  • 1.17e4
  • 1.21e4
  • 1.24e4
  • 1.29e4
75.88
  • 75.88
  • 60.67
  • 59.37
  • 58.36
  • 56.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.53e3
  • 7.53e3
74.78
  • 74.78
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
7.77e3
  • 7.77e3
  • 1.22e4
  • 1.59e4
74.00
  • 74.00
  • 59.08
  • 46.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
8.01e3
  • 8.01e3
  • 9.12e3
  • 1.09e4
  • 1.12e4
  • 1.15e4
  • 1.52e4
  • 1.54e4
  • 1.61e4
  • 1.62e4
73.18
  • 73.18
  • 69.48
  • 63.39
  • 62.35
  • 61.46
  • 49.08
  • 48.27
  • 46.04
  • 45.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.10e3
  • 8.10e3
72.88
  • 72.88
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.37e3
  • 8.37e3
71.97
  • 71.97
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.38e3
  • 8.38e3
71.93
  • 71.93
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.54e3
  • 8.54e3
71.39
  • 71.39
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.56e3
  • 8.56e3
71.33
  • 71.33
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
8.73e3
  • 8.73e3
  • 9.05e3
70.77
  • 70.77
  • 69.69
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.05e3
  • 9.05e3
69.70
  • 69.70
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.39e3
  • 9.39e3
68.56
  • 68.56
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.41e3
  • 9.41e3
68.48
  • 68.48
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.74
  • 62.74
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.15
  • 61.15
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
56.65
  • 56.65
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
1.31e4
  • 1.31e4
  • 1.66e4
56.24
  • 56.24
  • 44.47
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.32e4
  • 1.32e4
  • 1.35e4
  • 1.58e4
55.80
  • 55.80
  • 54.95
  • 47.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000028Segmentation:26+ somites
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.38e4
  • 1.38e4
53.92
  • 53.92
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000028Segmentation:26+ somites
1.42e4
  • 1.42e4
52.47
  • 52.47
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.01
  • 52.01
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.47e4
  • 1.47e4
50.88
  • 50.88
AEIR
  • AEIR
UBERON:0003072optic cup
  • ZFS:0000028Segmentation:26+ somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.75
  • 40.75
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria6 species6 genesCompare expression

Orthology information comes from OMA : ENSDARG00000040635.

Cross-references

EnsemblENSDARG00000040635 (rnf11b)
ZFINZDB-GENE-050913-69 (rnf11b)
EMBLCT025878
Uniprot/SPTREMBLB0V2S5, B0V2S5_DANRE

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