D. rerio Gene: ccdc93 - ENSDARG00000040678 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000040678
Nameccdc93
Descriptioncoiled-coil domain containing 93 [Source:ZFIN;Acc:ZDB-GENE-060421-8315]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:136790

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
4.68e3
  • 4.68e3
  • 4.92e3
  • 6.21e3
  • 9.48e3
84.33
  • 84.33
  • 83.53
  • 79.22
  • 68.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
5.06e3
  • 5.06e3
  • 7.19e3
83.05
  • 83.05
  • 75.93
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.07e3
  • 5.07e3
83.03
  • 83.03
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
5.53e3
  • 5.53e3
  • 5.71e3
  • 5.85e3
  • 5.91e3
  • 5.97e3
  • 6.04e3
  • 6.07e3
  • 6.08e3
  • 6.29e3
  • 6.54e3
  • 7.10e3
  • 7.38e3
  • 7.58e3
  • 1.01e4
  • 1.47e4
  • 1.49e4
  • 1.50e4
81.47
  • 81.47
  • 80.90
  • 80.41
  • 80.21
  • 80.02
  • 79.77
  • 79.67
  • 79.66
  • 78.93
  • 78.09
  • 76.24
  • 75.28
  • 74.61
  • 66.28
  • 50.68
  • 50.20
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.67e3
  • 5.67e3
81.03
  • 81.03
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.79e3
  • 5.79e3
80.60
  • 80.60
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
5.84e3
  • 5.84e3
  • 6.68e3
  • 7.09e3
  • 7.13e3
  • 7.49e3
  • 8.91e3
80.45
  • 80.45
  • 77.62
  • 76.28
  • 76.14
  • 74.92
  • 70.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
5.85e3
  • 5.85e3
  • 6.06e3
  • 6.28e3
  • 6.99e3
  • 8.51e3
80.42
  • 80.42
  • 79.70
  • 78.96
  • 76.59
  • 71.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
5.90e3
  • 5.90e3
  • 6.01e3
  • 6.52e3
  • 6.54e3
  • 6.73e3
  • 7.52e3
  • 7.67e3
  • 8.08e3
  • 1.03e4
  • 1.03e4
80.26
  • 80.26
  • 79.88
  • 78.16
  • 78.11
  • 77.47
  • 74.83
  • 74.33
  • 72.94
  • 65.46
  • 65.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.98e3
  • 5.98e3
79.98
  • 79.98
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.37e3
  • 6.37e3
78.66
  • 78.66
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.39e3
  • 6.39e3
78.61
  • 78.61
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
6.48e3
  • 6.48e3
  • 6.90e3
  • 1.21e4
78.29
  • 78.29
  • 76.89
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
6.51e3
  • 6.51e3
  • 7.30e3
78.19
  • 78.19
  • 75.56
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
6.54e3
  • 6.54e3
78.09
  • 78.09
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.56e3
  • 6.56e3
78.04
  • 78.04
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.62e3
  • 6.62e3
77.84
  • 77.84
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.63e3
  • 6.63e3
77.81
  • 77.81
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.76e3
  • 6.76e3
  • 8.00e3
77.36
  • 77.36
  • 73.23
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.97e3
  • 6.97e3
76.65
  • 76.65
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.08e3
  • 7.08e3
76.29
  • 76.29
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.24e3
  • 7.24e3
75.77
  • 75.77
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
7.35e3
  • 7.35e3
  • 8.13e3
  • 9.16e3
75.39
  • 75.39
  • 72.79
  • 69.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
7.82e3
  • 7.82e3
73.82
  • 73.82
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.89e3
  • 7.89e3
73.59
  • 73.59
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.18e3
  • 8.18e3
72.60
  • 72.60
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.18e3
  • 9.18e3
69.26
  • 69.26
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.23e3
  • 9.23e3
69.09
  • 69.09
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.34e3
  • 9.34e3
68.73
  • 68.73
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.83e3
  • 9.83e3
67.08
  • 67.08
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.10e4
  • 1.10e4
63.20
  • 63.20
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLBC115269, BX001051
EnsemblENSDARG00000040678 (ccdc93)
Uniprot/SPTREMBLQ1RLV7, Q1RLV7_DANRE
ZFINZDB-GENE-060421-8315 (ccdc93)

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