D. rerio Gene: shoc2 - ENSDARG00000040853 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000040853
Nameshoc2
DescriptionSHOC2 leucine-rich repeat scaffold protein [Source:ZFIN;Acc:ZDB-GENE-050208-523]
OrganismDanio rerio (zebrafish)
Synonym(s)a0jmd9, si:ch211-159c12.3, si:ch211-197i12.3, zgc:152956
Orthologs(s)25 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.28e3
  • 1.28e3
95.72
  • 95.72
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.29e3
  • 1.29e3
95.70
  • 95.70
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.55e3
  • 1.55e3
  • 2.02e3
94.81
  • 94.81
  • 93.25
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
3.16e3
  • 3.16e3
  • 5.11e3
89.42
  • 89.42
  • 82.89
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
4.08e3
  • 4.08e3
86.35
  • 86.35
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
4.15e3
  • 4.15e3
  • 6.71e3
  • 6.95e3
  • 7.30e3
  • 9.80e3
86.10
  • 86.10
  • 77.54
  • 76.73
  • 75.55
  • 67.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.77e3
  • 4.77e3
84.02
  • 84.02
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.46e3
  • 5.46e3
81.73
  • 81.73
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.56e3
  • 5.56e3
  • 9.29e3
81.39
  • 81.39
  • 68.90
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.63e3
  • 5.63e3
81.16
  • 81.16
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.11e3
  • 6.11e3
79.55
  • 79.55
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.16e3
  • 6.16e3
79.38
  • 79.38
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
6.68e3
  • 6.68e3
  • 9.09e3
77.63
  • 77.63
  • 69.55
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.87e3
  • 6.87e3
77.00
  • 77.00
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.95e3
  • 6.95e3
76.72
  • 76.72
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.19e3
  • 7.19e3
75.93
  • 75.93
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
7.98e3
  • 7.98e3
  • 9.85e3
73.29
  • 73.29
  • 67.02
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
8.99e3
  • 8.99e3
69.91
  • 69.91
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.05e3
  • 9.05e3
69.69
  • 69.69
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
9.67e3
  • 9.67e3
67.61
  • 67.61
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.47
  • 63.47
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.86
  • 61.86
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.15
  • 59.15
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.70
  • 46.70
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
38.05
  • 38.05
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria24 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000040853.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Opisthokonta3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000040853.

Cross-references

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