D. rerio Gene: GABARAPL1 - ENSDARG00000040971 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000040971
NameGABARAPL1
Descriptionzgc:92606 [Source:ZFIN;Acc:ZDB-GENE-040718-462]
OrganismDanio rerio (zebrafish)
Synonym(s)apg8l, atg8b, atg8l, gec1, wu:fj43a09

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
477
  • 477
98.41
  • 98.41
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
523
  • 523
  • 1.38e3
98.25
  • 98.25
  • 95.40
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
635
  • 635
97.88
  • 97.88
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
753
  • 753
  • 7.40e3
  • 9.00e3
  • 1.06e4
97.48
  • 97.48
  • 75.22
  • 69.85
  • 64.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
768
  • 768
  • 1.75e3
  • 2.79e3
  • 3.08e3
  • 3.61e3
  • 6.54e3
  • 6.94e3
  • 9.01e3
  • 9.11e3
  • 1.05e4
97.43
  • 97.43
  • 94.13
  • 90.65
  • 89.71
  • 87.91
  • 78.10
  • 76.78
  • 69.84
  • 69.50
  • 64.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
794
  • 794
97.35
  • 97.35
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
797
  • 797
97.33
  • 97.33
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
846
  • 846
97.17
  • 97.17
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.03e3
  • 1.03e3
96.57
  • 96.57
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.11e3
  • 1.11e3
96.29
  • 96.29
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.26e3
  • 1.26e3
95.77
  • 95.77
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
1.41e3
  • 1.41e3
  • 6.46e3
  • 1.45e4
95.30
  • 95.30
  • 78.37
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.42e3
  • 1.42e3
  • 1.95e3
95.23
  • 95.23
  • 93.49
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.58e3
  • 1.58e3
94.73
  • 94.73
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.67e3
  • 1.67e3
94.40
  • 94.40
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.94e3
  • 1.94e3
93.51
  • 93.51
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
2.23e3
  • 2.23e3
  • 4.31e3
  • 5.20e3
92.54
  • 92.54
  • 85.55
  • 82.58
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
2.48e3
  • 2.48e3
  • 2.98e3
  • 5.90e3
  • 6.36e3
  • 6.83e3
  • 8.73e3
91.69
  • 91.69
  • 90.04
  • 80.23
  • 78.70
  • 77.13
  • 70.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.61e3
  • 2.61e3
91.27
  • 91.27
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.80e3
  • 2.80e3
90.61
  • 90.61
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000049segmentation
3.10e3
  • 3.10e3
  • 4.98e3
  • 5.83e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.87e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.52e3
  • 7.91e3
  • 7.98e3
  • 8.12e3
  • 8.13e3
  • 8.25e3
  • 8.27e3
  • 8.42e3
  • 8.54e3
  • 8.96e3
  • 8.96e3
  • 9.04e3
  • 9.45e3
  • 9.54e3
  • 1.49e4
89.63
  • 89.63
  • 83.33
  • 80.48
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.01
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 74.83
  • 73.52
  • 73.29
  • 72.80
  • 72.80
  • 72.38
  • 72.32
  • 71.81
  • 71.39
  • 69.99
  • 69.99
  • 69.73
  • 68.35
  • 68.06
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.18e3
  • 3.18e3
89.34
  • 89.34
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
3.94e3
  • 3.94e3
86.81
  • 86.81
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.96e3
  • 4.96e3
83.38
  • 83.38
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
5.61e3
  • 5.61e3
  • 5.81e3
  • 9.02e3
  • 9.37e3
  • 9.48e3
81.21
  • 81.21
  • 80.54
  • 69.79
  • 68.61
  • 68.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.91e3
  • 5.91e3
80.21
  • 80.21
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.37e3
  • 6.37e3
78.67
  • 78.67
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.12e3
  • 9.12e3
69.46
  • 69.46
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
9.48e3
  • 9.48e3
  • 1.02e4
68.27
  • 68.27
  • 65.83
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.66e3
  • 9.66e3
67.65
  • 67.65
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.00e4
  • 1.00e4
66.38
  • 66.38
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.03e4
  • 1.03e4
65.64
  • 65.64
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC076097, BC171503, CR388102
EnsemblENSDARG00000040971 (GABARAPL1)
HGNCHGNC:4068 (GABARAPL1)
Uniprot/SPTREMBLQ6DH82, Q6DH82_DANRE
ZFINZDB-GENE-040718-462 (zgc:92606)

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