D. rerio Gene: pdcd4b - ENSDARG00000041022 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000041022
Namepdcd4b
Descriptionprogrammed cell death 4b [Source:ZFIN;Acc:ZDB-GENE-030131-9847]
OrganismDanio rerio (zebrafish)
Synonym(s)cb45, pdcd4, pdcd4-2, sb:cb45, wu:fc84b08

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
898
  • 898
  • 899
  • 1.54e3
  • 3.41e3
  • 3.94e3
97.00
  • 97.00
  • 96.99
  • 94.83
  • 88.57
  • 86.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.27e3
  • 1.27e3
  • 1.45e4
95.75
  • 95.75
  • 51.36
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
1.64e3
  • 1.64e3
  • 2.05e3
  • 4.67e3
  • 5.24e3
  • 1.20e4
94.52
  • 94.52
  • 93.13
  • 84.35
  • 82.45
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.66e3
  • 1.66e3
94.44
  • 94.44
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.77e3
  • 1.77e3
  • 4.86e3
94.08
  • 94.08
  • 83.74
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.17e3
  • 2.17e3
92.73
  • 92.73
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.25e3
  • 2.25e3
92.46
  • 92.46
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
2.32e3
  • 2.32e3
  • 3.73e3
  • 5.54e3
  • 6.70e3
  • 6.92e3
  • 7.04e3
  • 9.65e3
  • 1.10e4
  • 1.22e4
  • 1.24e4
92.23
  • 92.23
  • 87.50
  • 81.45
  • 77.57
  • 76.85
  • 76.42
  • 67.70
  • 63.02
  • 59.31
  • 58.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.33e3
  • 2.33e3
92.20
  • 92.20
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.43e3
  • 2.43e3
91.85
  • 91.85
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
2.47e3
  • 2.47e3
  • 1.06e4
  • 1.45e4
91.74
  • 91.74
  • 64.62
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.55e3
  • 2.55e3
  • 1.47e4
91.45
  • 91.45
  • 50.88
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.87e3
  • 2.87e3
  • 6.32e3
  • 7.42e3
90.39
  • 90.39
  • 78.82
  • 75.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
3.08e3
  • 3.08e3
  • 6.17e3
  • 6.48e3
89.70
  • 89.70
  • 79.33
  • 78.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
3.31e3
  • 3.31e3
  • 5.57e3
  • 6.67e3
  • 6.91e3
  • 8.92e3
  • 9.14e3
  • 9.17e3
  • 1.01e4
  • 1.06e4
  • 1.07e4
  • 1.11e4
  • 1.13e4
  • 1.16e4
  • 1.17e4
  • 1.18e4
  • 1.24e4
  • 1.43e4
  • 1.50e4
88.93
  • 88.93
  • 81.36
  • 77.67
  • 76.86
  • 70.13
  • 69.39
  • 69.30
  • 66.32
  • 64.48
  • 64.07
  • 62.85
  • 62.08
  • 61.10
  • 60.97
  • 60.34
  • 58.54
  • 52.23
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.40e3
  • 3.40e3
88.63
  • 88.63
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.45e3
  • 3.45e3
88.46
  • 88.46
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.75e3
  • 3.75e3
87.45
  • 87.45
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.85e3
  • 3.85e3
87.11
  • 87.11
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.98e3
  • 3.98e3
86.68
  • 86.68
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.10e3
  • 4.10e3
86.26
  • 86.26
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.22e3
  • 4.22e3
85.86
  • 85.86
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.65e3
  • 4.65e3
84.43
  • 84.43
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.23e3
  • 5.23e3
82.50
  • 82.50
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
5.25e3
  • 5.25e3
82.43
  • 82.43
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.71e3
  • 5.71e3
80.87
  • 80.87
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.21e3
  • 6.21e3
79.22
  • 79.22
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
6.39e3
  • 6.39e3
  • 8.83e3
  • 9.71e3
  • 1.05e4
  • 1.09e4
  • 1.10e4
78.59
  • 78.59
  • 70.45
  • 67.47
  • 64.98
  • 63.63
  • 63.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.86e3
  • 6.86e3
77.03
  • 77.03
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
7.37e3
  • 7.37e3
  • 1.07e4
  • 1.12e4
  • 1.12e4
  • 1.16e4
75.32
  • 75.32
  • 64.28
  • 62.49
  • 62.49
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.65e3
  • 8.65e3
71.03
  • 71.03
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.82e3
  • 8.82e3
70.47
  • 70.47
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.07e4
  • 1.07e4
  • 1.10e4
  • 1.18e4
  • 1.20e4
64.27
  • 64.27
  • 63.32
  • 60.50
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.10e4
  • 1.10e4
  • 1.22e4
63.33
  • 63.33
  • 58.98
AEIR
  • AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.14e4
  • 1.14e4
  • 1.20e4
  • 1.21e4
61.75
  • 61.75
  • 59.98
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.38
  • 61.38
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.17e4
  • 1.17e4
  • 1.20e4
60.84
  • 60.84
  • 59.98
AEIR
  • AEIR
  • AEIR
UBERON:0002087atrioventricular canal
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.46e4
55.16
  • 55.16
  • 51.26
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX005362, CR450802
EnsemblENSDARG00000041022 (pdcd4b)
Uniprot/SPTREMBLQ1L8Y5, Q1L8Y5_DANRE
ZFINZDB-GENE-030131-9847 (pdcd4b)

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