D. rerio Gene: calb2a - ENSDARG00000041062 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000041062
Namecalb2a
Descriptioncalbindin 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1677]
OrganismDanio rerio (zebrafish)
Synonym(s)calb2l, calretinin, wu:fq18e08, zgc:73115

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
560
  • 560
  • 1.52e3
98.13
  • 98.13
  • 94.92
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
859
  • 859
  • 3.03e3
  • 7.91e3
  • 1.18e4
  • 1.20e4
  • 1.29e4
97.13
  • 97.13
  • 89.85
  • 73.50
  • 60.60
  • 59.98
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.01e3
  • 1.01e3
  • 4.60e3
  • 8.95e3
  • 1.16e4
  • 1.45e4
  • 1.48e4
  • 1.51e4
  • 1.52e4
96.62
  • 96.62
  • 84.58
  • 70.04
  • 61.23
  • 51.44
  • 50.35
  • 49.38
  • 49.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.11e3
  • 1.11e3
  • 1.62e3
  • 3.35e3
96.29
  • 96.29
  • 94.59
  • 88.78
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000104life cycle
1.19e3
  • 1.19e3
  • 4.48e3
  • 1.17e4
  • 1.22e4
  • 1.49e4
96.01
  • 96.01
  • 85.00
  • 60.98
  • 59.08
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.71e3
  • 1.71e3
  • 2.68e3
  • 4.58e3
  • 9.36e3
  • 1.05e4
  • 1.49e4
  • 1.50e4
  • 1.51e4
  • 1.52e4
94.28
  • 94.28
  • 91.04
  • 84.66
  • 68.67
  • 64.96
  • 50.12
  • 49.81
  • 49.52
  • 49.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
2.13e3
  • 2.13e3
  • 7.47e3
  • 7.47e3
  • 1.14e4
  • 1.14e4
  • 1.23e4
92.86
  • 92.86
  • 75.00
  • 74.99
  • 61.75
  • 61.75
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
3.51e3
  • 3.51e3
88.26
  • 88.26
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.63e3
  • 5.63e3
81.15
  • 81.15
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.34e3
  • 6.34e3
78.77
  • 78.77
AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
6.40e3
  • 6.40e3
  • 8.96e3
  • 1.12e4
  • 1.28e4
78.57
  • 78.57
  • 69.99
  • 62.49
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.40e3
  • 7.40e3
  • 2.16e4
75.23
  • 75.23
  • 27.80
AEIR
  • AEIR
  • AEIR
CL:0000101sensory neuron
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.16e3
  • 8.16e3
72.67
  • 72.67
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
8.22e3
  • 8.22e3
  • 1.05e4
  • 1.17e4
  • 1.17e4
  • 1.20e4
  • 1.20e4
  • 1.21e4
  • 1.26e4
72.48
  • 72.48
  • 64.99
  • 60.84
  • 60.68
  • 59.98
  • 59.98
  • 59.50
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
8.30e3
  • 8.30e3
  • 1.36e4
  • 1.49e4
72.22
  • 72.22
  • 54.53
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.65e3
  • 8.65e3
  • 9.96e3
  • 1.15e4
  • 1.17e4
  • 1.19e4
  • 1.22e4
  • 1.23e4
  • 1.27e4
  • 1.27e4
71.04
  • 71.04
  • 66.66
  • 61.34
  • 60.68
  • 59.99
  • 59.06
  • 58.80
  • 57.47
  • 57.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
8.96e3
  • 8.96e3
  • 1.25e4
69.99
  • 69.99
  • 58.31
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
1.07e4
  • 1.07e4
  • 1.22e4
  • 1.28e4
64.27
  • 64.27
  • 59.08
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
1.08e4
  • 1.08e4
  • 1.08e4
  • 1.12e4
  • 1.14e4
  • 1.20e4
63.87
  • 63.87
  • 63.87
  • 62.48
  • 61.75
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.12e4
  • 1.12e4
  • 1.18e4
  • 1.23e4
62.49
  • 62.49
  • 60.50
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.17e4
  • 1.17e4
  • 1.20e4
  • 1.27e4
  • 1.27e4
60.84
  • 60.84
  • 59.98
  • 57.47
  • 57.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000037Larval:Day 5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.19e4
  • 1.19e4
  • 1.27e4
  • 1.27e4
  • 1.28e4
  • 1.29e4
  • 1.29e4
60.00
  • 60.00
  • 57.47
  • 57.47
  • 57.13
  • 56.79
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.19e4
  • 1.19e4
  • 1.21e4
  • 1.21e4
60.00
  • 60.00
  • 59.36
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.20e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
59.98
  • 59.98
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
1.24e4
  • 1.24e4
  • 1.39e4
58.33
  • 58.33
  • 53.55
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.49
  • 57.49
AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000037Larval:Day 5
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.30e4
  • 1.30e4
56.57
  • 56.57
AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000033Hatching:Long-pec
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.35e4
  • 1.35e4
54.77
  • 54.77
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.58
  • 54.58
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.03
  • 43.03
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
35.89
  • 35.89
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.60
  • 30.60
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.20e4
  • 2.20e4
26.39
  • 26.39
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.20e4
  • 2.20e4
26.20
  • 26.20
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.29e4
  • 2.29e4
23.24
  • 23.24
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC059479, BX548070, BX571884
EnsemblENSDARG00000041062 (calb2a)
Uniprot/SPTREMBLQ6PC44, Q6PC44_DANRE
ZFINZDB-GENE-040426-1677 (calb2a)

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