D. rerio Gene: ddb2 - ENSDARG00000041140 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000041140
Nameddb2
Descriptiondamage-specific DNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-050419-169]
OrganismDanio rerio (zebrafish)
Synonym(s)q1luf7, q1luf8, si:dkey-45f10.3

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.74e3
  • 1.74e3
  • 1.41e4
94.19
  • 94.19
  • 52.84
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.19e3
  • 3.19e3
89.32
  • 89.32
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.24e3
  • 3.24e3
89.17
  • 89.17
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.39e3
  • 3.39e3
  • 1.47e4
88.66
  • 88.66
  • 50.88
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.43e3
  • 3.43e3
88.51
  • 88.51
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.53e3
  • 3.53e3
88.18
  • 88.18
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.60e3
  • 3.60e3
  • 7.42e3
87.96
  • 87.96
  • 75.15
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.69e3
  • 3.69e3
87.66
  • 87.66
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
4.25e3
  • 4.25e3
  • 5.65e3
  • 5.86e3
  • 5.99e3
  • 7.22e3
85.78
  • 85.78
  • 81.08
  • 80.38
  • 79.93
  • 75.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.57e3
  • 4.57e3
  • 7.50e3
84.71
  • 84.71
  • 74.88
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.70e3
  • 4.70e3
84.28
  • 84.28
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.19e3
  • 5.19e3
82.63
  • 82.63
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.39e3
  • 5.39e3
81.94
  • 81.94
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.70e3
  • 5.70e3
80.93
  • 80.93
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.01e3
  • 6.01e3
79.89
  • 79.89
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.21e3
  • 6.21e3
  • 9.35e3
79.20
  • 79.20
  • 68.69
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.94e3
  • 6.94e3
76.78
  • 76.78
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.98e3
  • 6.98e3
76.64
  • 76.64
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
6.98e3
  • 6.98e3
  • 7.15e3
  • 7.34e3
  • 8.14e3
  • 8.14e3
  • 8.38e3
  • 9.24e3
  • 9.65e3
  • 1.24e4
  • 1.56e4
76.61
  • 76.61
  • 76.06
  • 75.41
  • 72.74
  • 72.74
  • 71.93
  • 69.08
  • 67.68
  • 58.53
  • 47.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.18e3
  • 7.18e3
75.97
  • 75.97
AEIR
  • AEIR
UBERON:0001904habenula
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 7.47e3
  • 9.96e3
75.00
  • 75.00
  • 75.00
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 8.15e3
  • 8.20e3
  • 8.78e3
  • 8.96e3
75.00
  • 75.00
  • 72.72
  • 72.54
  • 70.62
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
7.47e3
  • 7.47e3
  • 8.73e3
  • 9.53e3
  • 1.08e4
  • 1.10e4
  • 1.11e4
74.99
  • 74.99
  • 70.76
  • 68.10
  • 63.69
  • 63.22
  • 62.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.47e3
  • 7.47e3
74.98
  • 74.98
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
7.99e3
  • 7.99e3
  • 8.27e3
  • 9.53e3
  • 9.63e3
  • 1.00e4
  • 1.01e4
  • 1.03e4
  • 1.05e4
  • 1.06e4
  • 1.07e4
  • 1.12e4
  • 1.14e4
  • 1.19e4
  • 1.21e4
  • 1.24e4
  • 1.36e4
  • 1.43e4
  • 1.47e4
  • 1.48e4
73.26
  • 73.26
  • 72.30
  • 68.10
  • 67.76
  • 66.49
  • 66.30
  • 65.61
  • 64.98
  • 64.41
  • 64.33
  • 62.46
  • 61.75
  • 60.15
  • 59.64
  • 58.60
  • 54.61
  • 51.99
  • 50.90
  • 50.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.04e3
  • 8.04e3
73.07
  • 73.07
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
8.65e3
  • 8.65e3
  • 9.13e3
  • 9.34e3
  • 1.10e4
  • 1.10e4
  • 1.18e4
71.04
  • 71.04
  • 69.43
  • 68.73
  • 63.14
  • 63.14
  • 60.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.00e3
  • 9.00e3
69.85
  • 69.85
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.34e3
  • 9.34e3
  • 9.44e3
  • 9.75e3
  • 1.04e4
  • 1.09e4
68.73
  • 68.73
  • 68.40
  • 67.37
  • 65.19
  • 63.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.61e3
  • 9.61e3
  • 9.71e3
  • 9.71e3
67.83
  • 67.83
  • 67.48
  • 67.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
9.86e3
  • 9.86e3
  • 1.17e4
  • 1.35e4
66.98
  • 66.98
  • 60.75
  • 54.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.95e3
  • 9.95e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.02e4
  • 1.02e4
65.73
  • 65.73
AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.03e4
  • 1.03e4
  • 1.05e4
65.61
  • 65.61
  • 64.69
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.03e4
  • 1.03e4
65.58
  • 65.58
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.24
  • 65.24
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.04e4
  • 1.04e4
  • 1.05e4
65.19
  • 65.19
  • 64.98
AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.05e4
  • 1.05e4
  • 1.05e4
  • 1.09e4
64.98
  • 64.98
  • 64.98
  • 63.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.46
  • 61.46
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
  • 1.17e4
  • 1.65e4
60.89
  • 60.89
  • 60.80
  • 44.78
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC110096, BX942814
EnsemblENSDARG00000041140 (ddb2)
Uniprot/SPTREMBLZ4YI04, Z4YI04_DANRE, Z4YIW2, Z4YIW2_DANRE
Uniprot/SWISSPROTDDB2_DANRE, Q2YDS1
ZFINZDB-GENE-050419-169 (ddb2)

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