D. rerio Gene: slc17a6b - ENSDARG00000041150 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000041150
Nameslc17a6b
Descriptionsolute carrier family 17 (vesicular glutamate transporter), member 6b [Source:ZFIN;Acc:ZDB-GENE-030616-554]
OrganismDanio rerio (zebrafish)
Synonym(s)b3dgt1, blu, blumenkohl, ottdarp00000001594, q8aw47, si:packt73.2, si:packt90.2, si:xx-packt73.2, slc17a6, slc17a6gn, vglut2.1, vglut2a

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001904habenula
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
2.49e3
  • 2.49e3
  • 3.73e3
  • 7.47e3
91.67
  • 91.67
  • 87.50
  • 75.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
3.56e3
  • 3.56e3
  • 1.36e4
88.09
  • 88.09
  • 54.53
AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
4.27e3
  • 4.27e3
  • 5.98e3
  • 7.47e3
85.71
  • 85.71
  • 79.99
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
5.25e3
  • 5.25e3
  • 6.07e3
  • 9.38e3
  • 1.34e4
  • 1.42e4
82.41
  • 82.41
  • 79.66
  • 68.58
  • 55.01
  • 52.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
5.60e3
  • 5.60e3
  • 8.30e3
  • 8.40e3
81.25
  • 81.25
  • 72.21
  • 71.86
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
6.40e3
  • 6.40e3
  • 7.47e3
  • 7.91e3
  • 9.67e3
  • 9.67e3
78.57
  • 78.57
  • 74.99
  • 73.52
  • 67.63
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0005000spinal cord interneuron
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
7.47e3
  • 7.47e3
  • 8.54e3
  • 9.34e3
  • 9.60e3
  • 9.60e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
74.99
  • 74.99
  • 71.42
  • 68.74
  • 67.85
  • 67.85
  • 66.66
  • 66.65
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
74.99
  • 74.99
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
8.15e3
  • 8.15e3
  • 1.15e4
72.71
  • 72.71
  • 61.66
AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
  • 8.96e3
  • 9.34e3
  • 9.60e3
  • 1.03e4
  • 1.12e4
  • 1.12e4
  • 1.15e4
70.00
  • 70.00
  • 69.99
  • 68.74
  • 67.85
  • 65.61
  • 62.48
  • 62.48
  • 61.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0005233CiD (Danio)
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
70.00
  • 70.00
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000036Larval:Day 4
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.05e4
  • 1.05e4
  • 1.08e4
  • 1.08e4
64.98
  • 64.98
  • 63.87
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000679glutamatergic neuron
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000740retinal ganglion cell
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005725olfactory system
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.51e4
  • 1.51e4
49.32
  • 49.32
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
45.97
  • 45.97
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
38.94
  • 38.94
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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