D. rerio Gene: MSI1 (1 to many) - ENSDARG00000041299 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000041299
NameMSI1 (1 to many)
Descriptionzgc:110796 [Source:ZFIN;Acc:ZDB-GENE-050306-36]
OrganismDanio rerio (zebrafish)
Synonym(s)cb676, msi1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.95e3
  • 1.95e3
  • 1.21e4
  • 1.23e4
  • 1.29e4
  • 1.34e4
93.47
  • 93.47
  • 59.50
  • 58.67
  • 56.79
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
3.37e3
  • 3.37e3
  • 6.18e3
  • 7.09e3
  • 1.02e4
  • 1.28e4
88.73
  • 88.73
  • 79.32
  • 76.26
  • 65.90
  • 57.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
5.26e3
  • 5.26e3
  • 5.57e3
82.39
  • 82.39
  • 81.34
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.82e3
  • 6.82e3
77.17
  • 77.17
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
7.45e3
  • 7.45e3
  • 1.12e4
75.05
  • 75.05
  • 62.54
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
9.52e3
  • 9.52e3
  • 1.66e4
68.13
  • 68.13
  • 44.37
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.18
  • 66.18
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.01e4
  • 1.01e4
66.06
  • 66.06
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.10e4
  • 1.10e4
63.33
  • 63.33
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.26e4
  • 1.26e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.29e4
57.68
  • 57.68
  • 57.13
  • 57.13
  • 57.13
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.30e4
  • 1.30e4
  • 1.43e4
56.52
  • 56.52
  • 52.13
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.58e4
54.98
  • 54.98
  • 46.96
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.00
  • 54.00
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.33
  • 48.33
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.37
  • 45.37
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
43.95
  • 43.95
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.32
  • 41.32
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.22
  • 41.22
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.06
  • 41.06
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
39.96
  • 39.96
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBC090772, CABZ01074485
EnsemblENSDARG00000041299 (MSI1 (1 to many))
HGNCHGNC:7330 (MSI1 (1 to many))
Uniprot/SPTREMBLQ5CZN9, Q5CZN9_DANRE
ZFINZDB-GENE-050306-36 (zgc:110796)

Do not show this banner again