D. rerio Gene: afp4 - ENSDARG00000041490 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000041490
Nameafp4
Descriptionantifreeze protein type IV [Source:ZFIN;Acc:ZDB-GENE-030131-5217]
OrganismDanio rerio (zebrafish)
Synonym(s)afp4a, afp4b, fa18f02, fb64g03, wu:fa18f02, wu:fb64g03, zgc:161979
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
122
  • 122
  • 1.36e3
99.60
  • 99.60
  • 95.45
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
134
  • 134
  • 152
  • 205
  • 1.11e3
  • 1.90e4
99.55
  • 99.55
  • 99.49
  • 99.32
  • 96.29
  • 36.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
169
  • 169
  • 6.10e3
99.44
  • 99.44
  • 79.58
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
9.01e3
  • 9.01e3
  • 1.87e4
69.85
  • 69.85
  • 37.47
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.01e4
  • 1.01e4
66.02
  • 66.02
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.23e4
  • 1.23e4
58.69
  • 58.69
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.75
  • 55.75
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.11e4
  • 2.11e4
29.29
  • 29.29
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000041490.

Cross-references

EnsemblENSDARG00000041490 (afp4)
ZFINZDB-GENE-030131-5217 (afp4)
EMBLCR933818
Uniprot/SPTREMBLE9QGU7, E9QGU7_DANRE

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