D. rerio Gene: bhlhe41 - ENSDARG00000041691 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000041691
Namebhlhe41
Descriptionbasic helix-loop-helix family, member e41 [Source:ZFIN;Acc:ZDB-GENE-050419-146]
OrganismDanio rerio (zebrafish)
Synonym(s)bhlhb3l, bhlhb3l {eco:0000313|embl:aai63162.1,gn eco:0000313|zfin:zdb-gene-050419-146}, dec2, dec2gn, si:ch211-154h20.6
Orthologs(s)11 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
262
  • 262
  • 985
99.13
  • 99.13
  • 96.70
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
912
  • 912
96.95
  • 96.95
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
1.72e3
  • 1.72e3
  • 3.70e3
  • 5.24e3
  • 9.96e3
  • 1.42e4
94.23
  • 94.23
  • 87.60
  • 82.45
  • 66.67
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.82e3
  • 1.82e3
93.92
  • 93.92
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.87e3
  • 1.87e3
93.74
  • 93.74
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.87e3
  • 1.87e3
  • 1.62e4
93.73
  • 93.73
  • 45.89
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.89e3
  • 1.89e3
  • 1.20e4
93.67
  • 93.67
  • 59.74
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.11e3
  • 2.11e3
92.94
  • 92.94
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.81e3
  • 2.81e3
90.60
  • 90.60
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.85e3
  • 2.85e3
90.44
  • 90.44
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.39e3
  • 3.39e3
88.65
  • 88.65
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000034Hatching:Pec-fin
3.58e3
  • 3.58e3
  • 9.96e3
  • 1.49e4
88.03
  • 88.03
  • 66.66
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.76e3
  • 4.76e3
84.05
  • 84.05
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.88e3
  • 4.88e3
83.66
  • 83.66
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.52e3
  • 5.52e3
81.54
  • 81.54
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
6.75e3
  • 6.75e3
  • 1.15e4
  • 1.24e4
  • 1.31e4
  • 1.38e4
  • 1.39e4
  • 1.53e4
  • 1.55e4
  • 1.68e4
  • 1.70e4
77.39
  • 77.39
  • 61.64
  • 58.44
  • 56.14
  • 53.77
  • 53.49
  • 48.92
  • 47.97
  • 43.90
  • 42.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.95e3
  • 6.95e3
76.73
  • 76.73
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
7.14e3
  • 7.14e3
  • 9.49e3
  • 1.32e4
76.09
  • 76.09
  • 68.24
  • 55.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.30e3
  • 7.30e3
75.56
  • 75.56
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
7.47e3
  • 7.47e3
  • 7.47e3
  • 1.05e4
  • 1.15e4
75.00
  • 75.00
  • 75.00
  • 64.99
  • 61.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009635parachordal cartilage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000034Hatching:Pec-fin
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
8.89e3
  • 8.89e3
  • 1.09e4
  • 1.75e4
  • 2.09e4
70.23
  • 70.23
  • 63.53
  • 41.42
  • 30.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000019Gastrula:Shield
8.96e3
  • 8.96e3
  • 1.00e4
  • 1.02e4
  • 1.02e4
  • 1.09e4
  • 1.17e4
  • 1.17e4
  • 1.21e4
  • 1.28e4
  • 1.29e4
  • 1.45e4
  • 1.47e4
  • 1.52e4
  • 1.52e4
69.99
  • 69.99
  • 66.51
  • 65.89
  • 65.77
  • 63.38
  • 60.78
  • 60.70
  • 59.61
  • 57.22
  • 56.85
  • 51.52
  • 50.79
  • 49.12
  • 48.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
9.44e3
  • 9.44e3
  • 1.28e4
  • 1.40e4
  • 1.40e4
  • 1.49e4
68.40
  • 68.40
  • 57.14
  • 53.10
  • 53.10
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000035Larval:Protruding-mouth
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
1.19e4
  • 1.19e4
  • 1.31e4
  • 1.42e4
60.00
  • 60.00
  • 56.23
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003063prechordal plate
  • ZFS:0000020Gastrula:75%-epiboly
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0003062primitive knot
  • ZFS:0000019Gastrula:Shield
1.22e4
  • 1.22e4
59.08
  • 59.08
AEIR
  • AEIR
UBERON:0002065posterior cardinal vein
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000030Pharyngula:Prim-15
1.24e4
  • 1.24e4
  • 1.49e4
  • 1.49e4
58.33
  • 58.33
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006859swim bladder bud
  • ZFS:0000033Hatching:Long-pec
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
1.25e4
  • 1.25e4
  • 1.31e4
58.31
  • 58.31
  • 56.23
AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
1.27e4
  • 1.27e4
  • 1.42e4
57.47
  • 57.47
  • 52.35
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.96
  • 56.96
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000028Segmentation:26+ somites
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000028Segmentation:26+ somites
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.48e4
  • 1.48e4
50.32
  • 50.32
AEIR
  • AEIR
UBERON:0002064common cardinal vein
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001366tract of the postoptic commissure
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010170region of neural crest
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
1.49e4
  • 1.49e4
  • 1.49e4
49.99
  • 49.99
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.76e4
  • 1.76e4
41.00
  • 41.00
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.79e4
  • 1.79e4
40.06
  • 40.06
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000041691 (bhlhe41)
ZFINZDB-GENE-050419-146 (bhlhe41)
EMBLAB212760, BC163162, BC163191, BX000347, BX649507, DQ779789
Uniprot/SPTREMBLQ2PGD2, Q2PGD2_DANRE

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