D. rerio Gene: zgc:55461 - ENSDARG00000041723 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000041723
Namezgc:55461
Descriptionzgc:55461 [Source:ZFIN;Acc:ZDB-GENE-040426-2879]
OrganismDanio rerio (zebrafish)
Synonym(s)fd02b12, wu:fd02b12

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
72.1
  • 72.1
  • 9.78e3
99.76
  • 99.76
  • 67.25
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
101
  • 101
  • 207
  • 1.58e3
  • 2.13e3
  • 2.38e3
99.66
  • 99.66
  • 99.31
  • 94.71
  • 92.86
  • 92.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
315
  • 315
  • 1.28e4
98.95
  • 98.95
  • 57.26
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
497
  • 497
98.34
  • 98.34
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
528
  • 528
98.24
  • 98.24
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
988
  • 988
96.69
  • 96.69
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.14e3
  • 1.14e3
96.17
  • 96.17
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.33e3
  • 1.33e3
95.55
  • 95.55
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.35e3
  • 1.35e3
95.49
  • 95.49
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.86e3
  • 1.86e3
93.78
  • 93.78
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.87e3
  • 1.87e3
  • 2.02e3
  • 2.41e3
  • 2.80e3
  • 2.86e3
  • 2.87e3
  • 2.98e3
  • 3.64e3
  • 4.26e3
  • 4.59e3
93.74
  • 93.74
  • 93.24
  • 91.92
  • 90.63
  • 90.44
  • 90.38
  • 90.01
  • 87.82
  • 85.75
  • 84.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.05e3
  • 2.05e3
  • 2.70e3
  • 9.03e3
  • 1.31e4
93.14
  • 93.14
  • 90.96
  • 69.76
  • 55.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
2.09e3
  • 2.09e3
  • 8.82e3
93.00
  • 93.00
  • 70.48
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
2.14e3
  • 2.14e3
  • 2.90e3
  • 3.96e3
  • 4.35e3
  • 4.69e3
  • 5.03e3
92.85
  • 92.85
  • 90.30
  • 86.75
  • 85.44
  • 84.30
  • 83.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000106zygote stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000036Larval:Day 4
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
2.50e3
  • 2.50e3
  • 2.59e3
  • 2.82e3
  • 2.96e3
  • 3.16e3
  • 3.48e3
  • 3.71e3
  • 4.22e3
  • 4.24e3
  • 4.68e3
  • 5.04e3
  • 5.28e3
  • 6.84e3
  • 8.14e3
  • 1.29e4
  • 1.33e4
  • 1.49e4
91.65
  • 91.65
  • 91.32
  • 90.56
  • 90.08
  • 89.43
  • 88.34
  • 87.59
  • 85.89
  • 85.81
  • 84.32
  • 83.12
  • 82.32
  • 77.09
  • 72.74
  • 56.68
  • 55.48
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
3.39e3
  • 3.39e3
  • 4.08e3
  • 4.91e3
88.67
  • 88.67
  • 86.34
  • 83.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.65e3
  • 3.65e3
  • 9.57e3
87.77
  • 87.77
  • 67.96
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.87e3
  • 3.87e3
87.06
  • 87.06
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.00e3
  • 4.00e3
86.61
  • 86.61
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.34e3
  • 4.34e3
85.49
  • 85.49
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.37e3
  • 4.37e3
  • 4.86e3
85.35
  • 85.35
  • 83.72
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.67e3
  • 4.67e3
84.38
  • 84.38
AEIR
  • AEIR
UBERON:0002540lateral line system
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
4.98e3
  • 4.98e3
  • 4.98e3
  • 7.47e3
  • 7.47e3
  • 1.07e4
  • 1.25e4
  • 1.25e4
  • 1.25e4
83.33
  • 83.33
  • 83.33
  • 74.99
  • 74.99
  • 64.28
  • 58.31
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000026Segmentation:14-19 somites
5.60e3
  • 5.60e3
  • 5.60e3
  • 7.47e3
  • 7.47e3
  • 7.86e3
  • 9.67e3
  • 1.03e4
  • 1.41e4
81.24
  • 81.24
  • 81.24
  • 74.99
  • 74.99
  • 73.67
  • 67.63
  • 65.61
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.86e3
  • 5.86e3
80.37
  • 80.37
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.21e3
  • 6.21e3
79.22
  • 79.22
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.29e3
  • 6.29e3
78.93
  • 78.93
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.65e3
  • 6.65e3
77.73
  • 77.73
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.75e3
  • 6.75e3
  • 1.46e4
77.39
  • 77.39
  • 51.07
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.93e3
  • 6.93e3
76.79
  • 76.79
AEIR
  • AEIR
UBERON:2000001Kupffer's vesicle
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
  • 8.04e3
  • 8.04e3
74.99
  • 74.99
  • 73.07
  • 73.07
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 7.91e3
  • 8.53e3
  • 9.67e3
  • 9.67e3
74.99
  • 74.99
  • 73.52
  • 71.43
  • 67.63
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.65e3
  • 7.65e3
74.37
  • 74.37
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.15e3
  • 8.15e3
  • 8.71e3
  • 9.96e3
  • 1.07e4
72.72
  • 72.72
  • 70.82
  • 66.65
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
8.30e3
  • 8.30e3
  • 9.33e3
  • 9.60e3
  • 9.96e3
  • 1.09e4
  • 1.09e4
  • 1.12e4
72.22
  • 72.22
  • 68.74
  • 67.85
  • 66.66
  • 63.63
  • 63.63
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000026Segmentation:14-19 somites
8.54e3
  • 8.54e3
71.42
  • 71.42
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.76e3
  • 8.76e3
70.66
  • 70.66
AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
8.88e3
  • 8.88e3
70.25
  • 70.25
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000037Larval:Day 5
9.19e3
  • 9.19e3
  • 9.60e3
  • 9.60e3
  • 9.96e3
  • 1.02e4
  • 1.05e4
  • 1.05e4
  • 1.12e4
69.22
  • 69.22
  • 67.85
  • 67.85
  • 66.65
  • 65.77
  • 64.69
  • 64.69
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
9.34e3
  • 9.34e3
  • 9.60e3
  • 9.60e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 1.07e4
68.74
  • 68.74
  • 67.85
  • 67.85
  • 66.66
  • 66.65
  • 66.65
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
9.44e3
  • 9.44e3
68.40
  • 68.40
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.71e3
  • 9.71e3
67.48
  • 67.48
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.02e4
  • 1.02e4
  • 1.05e4
  • 1.07e4
65.77
  • 65.77
  • 64.69
  • 64.26
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000023forerunner cell group (Danio)
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
1.03e4
  • 1.03e4
  • 1.03e4
  • 1.03e4
  • 1.07e4
  • 1.09e4
  • 1.09e4
65.61
  • 65.61
  • 65.37
  • 65.37
  • 64.27
  • 63.63
  • 63.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.10e4
  • 1.10e4
  • 1.10e4
  • 1.14e4
  • 1.38e4
  • 1.38e4
  • 1.38e4
  • 1.38e4
  • 1.38e4
  • 1.39e4
63.14
  • 63.14
  • 63.14
  • 61.88
  • 53.83
  • 53.83
  • 53.83
  • 53.83
  • 53.83
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.12e4
  • 1.12e4
  • 1.17e4
62.48
  • 62.48
  • 60.70
AEIR
  • AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.28e4
  • 1.28e4
  • 1.38e4
  • 1.38e4
57.13
  • 57.13
  • 53.83
  • 53.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.20
  • 54.20
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.76
  • 48.76
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.52
  • 44.52
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC071414, CR855258
EnsemblENSDARG00000041723 (zgc:55461)
Uniprot/SPTREMBLQ6IQJ2, Q6IQJ2_DANRE
ZFINZDB-GENE-040426-2879 (zgc:55461), ZDB-GENE-051127-13 (zgc:123292), ZDB-GENE-060929-568 (zgc:153264)

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