D. rerio Gene: ndst3 - ENSDARG00000041776 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000041776
Namendst3
DescriptionN-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 [Source:ZFIN;Acc:ZDB-GENE-090312-199]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-152j23.1
Orthologs(s)24 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.90e3
  • 5.90e3
  • 1.31e4
80.24
  • 80.24
  • 56.14
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
6.45e3
  • 6.45e3
  • 6.84e3
  • 7.85e3
  • 7.90e3
  • 8.25e3
78.42
  • 78.42
  • 77.10
  • 73.72
  • 73.53
  • 72.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
6.50e3
  • 6.50e3
  • 1.22e4
  • 1.34e4
  • 1.34e4
  • 1.36e4
78.24
  • 78.24
  • 59.08
  • 54.99
  • 54.99
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.59e3
  • 6.59e3
77.93
  • 77.93
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:00072322 cell stage
6.79e3
  • 6.79e3
77.27
  • 77.27
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
8.26e3
  • 8.26e3
72.35
  • 72.35
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
9.26e3
  • 9.26e3
  • 1.30e4
69.01
  • 69.01
  • 56.54
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.22
  • 63.22
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.23e4
  • 1.23e4
58.98
  • 58.98
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.91
  • 57.91
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
1.28e4
  • 1.28e4
57.12
  • 57.12
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.28e4
  • 1.28e4
  • 1.42e4
57.11
  • 57.11
  • 52.47
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
1.28e4
  • 1.28e4
  • 1.34e4
  • 1.34e4
  • 1.36e4
57.11
  • 57.11
  • 55.24
  • 54.99
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000033Hatching:Long-pec
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
1.35e4
  • 1.35e4
54.73
  • 54.73
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000026Segmentation:14-19 somites
1.39e4
  • 1.39e4
53.31
  • 53.31
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.61
  • 51.61
AEIR
  • AEIR
UBERON:0002067dermis
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
  • 1.62e4
48.42
  • 48.42
  • 45.79
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.64e4
  • 1.64e4
45.00
  • 45.00
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.29
  • 42.29
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.74e4
  • 1.74e4
41.81
  • 41.81
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.26
  • 41.26
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.45
  • 36.45
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.40
  • 36.40
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
35.15
  • 35.15
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.95e4
  • 1.95e4
34.83
  • 34.83
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.32
  • 32.32
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.08e4
  • 2.08e4
30.49
  • 30.49
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000041776.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000041776.

Cross-references

EnsemblENSDARG00000041776 (ndst3)
ZFINZDB-GENE-090312-199 (ndst3)
EMBLBX248500, BX511095
Uniprot/SPTREMBLE7F825, E7F825_DANRE, E9QBF9, E9QBF9_DANRE

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