D. rerio Gene: trdn - ENSDARG00000041779 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000041779
Nametrdn
Descriptiontriadin [Source:ZFIN;Acc:ZDB-GENE-041014-193]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-72g4.2, zgc:162523

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
822
  • 822
  • 2.09e3
  • 3.19e3
  • 3.64e3
  • 3.87e3
97.25
  • 97.25
  • 93.02
  • 89.32
  • 87.83
  • 87.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
909
  • 909
96.96
  • 96.96
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.09e3
  • 1.09e3
  • 1.74e3
  • 8.96e3
  • 9.44e3
96.36
  • 96.36
  • 94.17
  • 69.99
  • 68.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.14e3
  • 1.14e3
96.18
  • 96.18
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.42e3
  • 1.42e3
  • 2.32e3
95.26
  • 95.26
  • 92.22
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.36e3
  • 2.36e3
92.11
  • 92.11
AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
4.27e3
  • 4.27e3
  • 4.27e3
  • 7.03e3
  • 7.03e3
  • 8.96e3
  • 8.96e3
  • 8.96e3
  • 9.96e3
  • 1.12e4
  • 1.14e4
  • 1.14e4
85.71
  • 85.71
  • 85.71
  • 76.46
  • 76.46
  • 69.99
  • 69.99
  • 69.99
  • 66.65
  • 62.48
  • 61.75
  • 61.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.58e3
  • 6.58e3
  • 1.25e4
77.98
  • 77.98
  • 58.11
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.93e3
  • 7.93e3
73.45
  • 73.45
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.30e3
  • 8.30e3
  • 8.65e3
  • 1.05e4
  • 1.08e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
72.21
  • 72.21
  • 71.04
  • 64.98
  • 63.87
  • 59.98
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.65e3
  • 8.65e3
  • 8.65e3
71.04
  • 71.04
  • 71.04
AEIR
  • AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
9.96e3
  • 9.96e3
  • 1.05e4
66.65
  • 66.65
  • 64.98
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.52
  • 66.52
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000026Segmentation:14-19 somites
1.12e4
  • 1.12e4
62.48
  • 62.48
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
1.14e4
  • 1.14e4
61.88
  • 61.88
AEIR
  • AEIR
UBERON:0005498primitive heart tube
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.15e4
  • 1.15e4
  • 1.15e4
  • 1.20e4
61.53
  • 61.53
  • 61.53
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.27
  • 60.27
AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.20e4
  • 1.20e4
  • 1.25e4
  • 1.26e4
59.98
  • 59.98
  • 58.31
  • 57.68
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.80
  • 57.80
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.63
  • 50.63
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.34
  • 50.34
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.62e4
  • 1.62e4
45.73
  • 45.73
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.72e4
  • 1.72e4
42.38
  • 42.38
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.85
  • 39.85
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.90e4
  • 1.90e4
36.32
  • 36.32
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.22e4
  • 2.22e4
25.77
  • 25.77
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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