Gene: SDR16C5 (1 to many) - ENSDARG00000041873 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000041873
Name	SDR16C5 (1 to many)
Description	si:dkey-221h15.4 [Source:ZFIN;Acc:ZDB-GENE-041014-340]
Organism	Danio rerio (zebrafish)
Synonym(s)	rdh-e2, rdhe2
Orthologs(s)	1 orthologs
Paralog(s)	37 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	1.03e4 1.03e4	65.65 65.65	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.17e4 1.17e4	60.66 60.66	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.19e4 1.19e4	60.07 60.07	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.26e4 1.26e4	57.85 57.85	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.36e4 1.36e4	54.63 54.63	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.42e4 1.42e4	52.35 52.35	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000019Gastrula:Shield	1.60e4 1.60e4 1.68e4	46.42 46.42 43.79	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage UBERON:0000068embryo stage ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5	1.63e4 1.63e4 1.66e4 1.73e4 2.10e4 2.16e4	45.49 45.49 44.30 42.19 29.63 27.81	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.63e4 1.63e4	45.30 45.30	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	1.67e4 1.67e4 2.31e4	44.12 44.12 22.65	AEIR AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.69e4 1.69e4	43.28 43.28	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.72e4 1.72e4	42.28 42.28	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.72e4 1.72e4	42.26 42.26	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	1.77e4 1.77e4 2.04e4	40.57 40.57 31.71	AEIR AEIR AEIR
UBERON:0000948	heart	[+] 1 stage UBERON:0000066fully formed stage	1.78e4 1.78e4	40.46 40.46	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.88e4 1.88e4	37.02 37.02	AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000011Blastula:1k-cell	1.89e4 1.89e4	36.82 36.82	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.95e4 1.95e4	34.61 34.61	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	2.01e4 2.01e4	32.70 32.70	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	2.07e4 2.07e4	30.61 30.61	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	2.11e4 2.11e4	29.27 29.27	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	2.22e4 2.22e4	25.53 25.53	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Bilateria	1 species Caenorhabditis elegans (nematode)	1 gene WBGene00000968 dhs-4	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000041873.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Bilateria	4 genes ENSDARG00000012369 rdh10b ENSDARG00000016233 sdr16c5a ENSDARG00000017794 sdr16c5b ENSDARG00000058730 rdh10a	Compare expression	[+]
Eumetazoa	5 genes ENSDARG00000012369 rdh10b ENSDARG00000016233 sdr16c5a ENSDARG00000017794 sdr16c5b ENSDARG00000028862 rdh20 ENSDARG00000058730 rdh10a	Compare expression	[+]
Opisthokonta	7 genes ENSDARG00000012369 rdh10b ENSDARG00000016233 sdr16c5a ENSDARG00000017794 sdr16c5b ENSDARG00000028862 rdh20 ENSDARG00000044803 dhrs3b ENSDARG00000044982 dhrs3a ENSDARG00000058730 rdh10a	Compare expression	[+]
Eukaryota	37 genes ENSDARG00000002467 rdh14b ENSDARG00000002523 hsdl2 ENSDARG00000008306 rdh5 ENSDARG00000008491 RDH13 (1 to many) ENSDARG00000010764 flj13639 ENSDARG00000011371 zgc:64106 ENSDARG00000011770 dhrs12 ENSDARG00000012016 hpgd ENSDARG00000012369 rdh10b ENSDARG00000015709 hsd17b12a ENSDARG00000016233 sdr16c5a ENSDARG00000017794 sdr16c5b ENSDARG00000017882 rdh1 ENSDARG00000018069 rdh12 ENSDARG00000019260 dhrs9 ENSDARG00000026236 zgc:56585 ENSDARG00000026322 dhrs13a.1 ENSDARG00000028862 rdh20 ENSDARG00000031336 hsd20b2 ENSDARG00000031814 dhrs13b ENSDARG00000034577 RDH13 (1 to many) ENSDARG00000035579 si:dkey-174n20.1 ENSDARG00000035872 hsd17b12b ENSDARG00000038969 zgc:113142 ENSDARG00000039299 rdh14a ENSDARG00000041137 dhrs13a.3 ENSDARG00000043562 zgc:65997 ENSDARG00000044803 dhrs3b ENSDARG00000044982 dhrs3a ENSDARG00000045277 rdh12l ENSDARG00000054797 RDH13 (1 to many) ENSDARG00000058730 rdh10a ENSDARG00000058966 zgc:112332 ENSDARG00000068474 si:dkey-94e7.2 ENSDARG00000076970 si:ch211-165b10.3 ENSDARG00000089205 si:dkey-73n8.3 ENSDARG00000098746 dhrs13l1	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000041873.

Cross-references

Ensembl	ENSDARG00000041873 (SDR16C5 (1 to many))
HGNC	HGNC:30311 (SDR16C5 (1 to many))
ZFIN	ZDB-GENE-041014-340 (si:dkey-221h15.4)
EMBL	BX511178
Uniprot/SPTREMBL	F1QS94, F1QS94_DANRE