D. rerio Gene: sf3a1 - ENSDARG00000041887 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000041887
Namesf3a1
Descriptionsplicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dz150f13.2, wu:fc38e01, wu:fc50a11, wu:fj37c05, zgc:65786

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
485
  • 485
  • 564
  • 1.49e3
  • 1.95e3
  • 2.10e3
98.38
  • 98.38
  • 98.11
  • 95.01
  • 93.49
  • 92.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
702
  • 702
  • 971
  • 1.68e3
  • 1.76e3
  • 2.09e3
  • 2.13e3
97.65
  • 97.65
  • 96.75
  • 94.38
  • 94.11
  • 93.00
  • 92.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
703
  • 703
97.65
  • 97.65
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
792
  • 792
  • 800
  • 864
  • 933
  • 1.07e3
  • 1.07e3
  • 1.18e3
  • 1.70e3
  • 1.82e3
  • 2.21e3
  • 2.31e3
  • 2.82e3
  • 2.98e3
  • 3.30e3
  • 3.56e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.67e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 5.27e3
  • 6.15e3
  • 6.97e3
  • 6.97e3
97.35
  • 97.35
  • 97.33
  • 97.11
  • 96.88
  • 96.43
  • 96.41
  • 96.05
  • 94.31
  • 93.92
  • 92.60
  • 92.25
  • 90.57
  • 90.02
  • 88.96
  • 88.09
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 84.37
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 82.35
  • 79.40
  • 76.66
  • 76.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.10e3
  • 1.10e3
96.34
  • 96.34
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.11e3
  • 1.11e3
96.29
  • 96.29
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.15e3
  • 1.15e3
  • 1.46e3
  • 1.55e3
  • 1.61e3
  • 2.29e3
  • 2.48e3
  • 2.75e3
  • 2.80e3
  • 3.80e3
  • 6.46e3
96.16
  • 96.16
  • 95.10
  • 94.81
  • 94.61
  • 92.35
  • 91.68
  • 90.78
  • 90.62
  • 87.26
  • 78.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.17e3
  • 1.17e3
96.09
  • 96.09
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.36e3
  • 1.36e3
95.45
  • 95.45
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.43e3
  • 1.43e3
  • 3.50e3
95.20
  • 95.20
  • 88.29
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.79e3
  • 1.79e3
94.01
  • 94.01
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.92e3
  • 1.92e3
93.57
  • 93.57
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.97e3
  • 1.97e3
93.40
  • 93.40
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.99e3
  • 1.99e3
93.35
  • 93.35
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.26e3
  • 2.26e3
92.43
  • 92.43
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.36e3
  • 2.36e3
92.12
  • 92.12
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.50e3
  • 2.50e3
91.65
  • 91.65
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.56e3
  • 2.56e3
91.42
  • 91.42
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.66e3
  • 2.66e3
91.09
  • 91.09
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.70e3
  • 2.70e3
90.96
  • 90.96
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.70e3
  • 2.70e3
90.96
  • 90.96
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
2.81e3
  • 2.81e3
  • 5.89e3
90.60
  • 90.60
  • 80.29
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.88e3
  • 2.88e3
90.36
  • 90.36
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.89e3
  • 2.89e3
  • 2.96e3
90.33
  • 90.33
  • 90.10
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.98e3
  • 2.98e3
90.01
  • 90.01
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.98e3
  • 2.98e3
90.01
  • 90.01
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.04e3
  • 3.04e3
89.83
  • 89.83
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
3.08e3
  • 3.08e3
  • 3.60e3
  • 4.46e3
89.69
  • 89.69
  • 87.93
  • 85.07
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.09e3
  • 3.09e3
89.64
  • 89.64
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.45e3
  • 3.45e3
88.45
  • 88.45
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.87e3
  • 3.87e3
87.05
  • 87.05
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.21e3
  • 4.21e3
  • 4.82e3
  • 5.33e3
  • 5.78e3
85.90
  • 85.90
  • 83.86
  • 82.15
  • 80.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
4.90e3
  • 4.90e3
  • 6.33e3
83.59
  • 83.59
  • 78.79
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.55e3
  • 5.55e3
81.42
  • 81.42
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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