D. rerio Gene: cad - ENSDARG00000041895 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000041895
Namecad
Descriptioncarbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase [Source:ZFIN;Acc:ZDB-GENE-021030-4]
OrganismDanio rerio (zebrafish)
Synonym(s)cb456, si:dkey-221h15.3, wu:fc30c12, wu:fc33d01, wu:fc67g02

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
460
  • 460
98.46
  • 98.46
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
532
  • 532
  • 560
  • 604
  • 632
  • 653
  • 665
  • 1.09e3
  • 1.68e3
  • 3.93e3
  • 4.35e3
98.22
  • 98.22
  • 98.13
  • 97.98
  • 97.89
  • 97.82
  • 97.78
  • 96.36
  • 94.39
  • 86.85
  • 85.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
548
  • 548
  • 1.43e3
  • 4.20e3
  • 5.29e3
  • 1.23e4
  • 1.27e4
98.17
  • 98.17
  • 95.22
  • 85.94
  • 82.30
  • 58.67
  • 57.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
619
  • 619
97.93
  • 97.93
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
671
  • 671
97.76
  • 97.76
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
736
  • 736
  • 825
  • 1.32e3
  • 1.48e3
  • 1.60e3
  • 1.62e3
97.54
  • 97.54
  • 97.24
  • 95.60
  • 95.05
  • 94.64
  • 94.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:00072368 cell stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
793
  • 793
  • 889
  • 975
  • 1.04e3
  • 1.11e3
  • 1.22e3
  • 1.30e3
  • 1.39e3
  • 1.61e3
  • 3.56e3
  • 3.71e3
  • 3.71e3
  • 5.15e3
  • 5.71e3
  • 6.54e3
  • 6.79e3
  • 7.35e3
  • 1.41e4
  • 1.43e4
  • 1.47e4
97.35
  • 97.35
  • 97.03
  • 96.74
  • 96.51
  • 96.28
  • 95.93
  • 95.64
  • 95.36
  • 94.60
  • 88.10
  • 87.58
  • 87.58
  • 82.76
  • 80.89
  • 78.12
  • 77.27
  • 75.41
  • 52.86
  • 52.23
  • 50.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.30e3
  • 1.30e3
95.66
  • 95.66
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.30e3
  • 1.30e3
95.64
  • 95.64
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.40e3
  • 1.40e3
95.32
  • 95.32
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
1.44e3
  • 1.44e3
  • 1.45e3
  • 2.15e3
  • 2.49e3
  • 2.52e3
95.19
  • 95.19
  • 95.16
  • 92.82
  • 91.67
  • 91.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.50e3
  • 1.50e3
94.99
  • 94.99
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.05e3
  • 2.05e3
93.14
  • 93.14
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.26e3
  • 2.26e3
92.45
  • 92.45
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.81e3
  • 2.81e3
90.60
  • 90.60
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.02e3
  • 3.02e3
89.89
  • 89.89
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.14e3
  • 3.14e3
89.49
  • 89.49
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.26e3
  • 3.26e3
  • 4.91e3
89.08
  • 89.08
  • 83.55
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.30e3
  • 3.30e3
88.94
  • 88.94
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.31e3
  • 3.31e3
  • 6.27e3
  • 1.22e4
88.93
  • 88.93
  • 79.02
  • 59.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.65e3
  • 3.65e3
87.77
  • 87.77
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.84e3
  • 3.84e3
87.16
  • 87.16
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.90e3
  • 3.90e3
86.95
  • 86.95
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
3.91e3
  • 3.91e3
  • 1.21e4
  • 1.28e4
  • 1.28e4
  • 1.31e4
86.93
  • 86.93
  • 59.36
  • 57.13
  • 57.12
  • 56.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.19e3
  • 4.19e3
85.96
  • 85.96
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
4.35e3
  • 4.35e3
  • 8.31e3
85.44
  • 85.44
  • 72.19
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.56e3
  • 4.56e3
  • 4.66e3
  • 5.43e3
84.74
  • 84.74
  • 84.40
  • 81.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.68e3
  • 4.68e3
  • 7.21e3
84.32
  • 84.32
  • 75.85
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.89e3
  • 4.89e3
83.61
  • 83.61
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.90e3
  • 4.90e3
83.61
  • 83.61
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.38e3
  • 5.38e3
81.99
  • 81.99
AEIR
  • AEIR
UBERON:0002049vasculature
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
8.04e3
  • 8.04e3
  • 8.96e3
  • 9.25e3
  • 9.67e3
  • 9.67e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 1.05e4
73.07
  • 73.07
  • 69.99
  • 69.03
  • 67.63
  • 67.63
  • 67.48
  • 66.65
  • 66.65
  • 66.65
  • 64.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.79e3
  • 8.79e3
70.58
  • 70.58
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
9.06e3
  • 9.06e3
69.66
  • 69.66
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
9.96e3
  • 9.96e3
66.65
  • 66.65
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.29e4
66.65
  • 66.65
  • 56.65
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.07e4
  • 1.07e4
  • 1.12e4
  • 1.24e4
  • 1.33e4
64.28
  • 64.28
  • 62.50
  • 58.32
  • 55.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
1.07e4
  • 1.07e4
  • 1.12e4
  • 1.21e4
  • 1.26e4
  • 1.28e4
  • 1.28e4
64.28
  • 64.28
  • 62.49
  • 59.36
  • 57.68
  • 57.13
  • 57.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
1.07e4
  • 1.07e4
  • 1.28e4
  • 1.29e4
64.27
  • 64.27
  • 57.13
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.14e4
  • 1.14e4
  • 1.26e4
  • 1.32e4
  • 1.33e4
  • 1.33e4
  • 1.34e4
  • 1.34e4
61.88
  • 61.88
  • 57.87
  • 55.86
  • 55.53
  • 55.53
  • 55.24
  • 55.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003065ciliary marginal zone
  • ZFS:0000033Hatching:Long-pec
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
1.21e4
  • 1.21e4
59.36
  • 59.36
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0002120pronephros
  • ZFS:0000033Hatching:Long-pec
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000033Hatching:Long-pec
1.40e4
  • 1.40e4
53.10
  • 53.10
AEIR
  • AEIR
UBERON:0002100trunk
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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