Gene: ccl38a.4 - ENSDARG00000041917 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000041917
Name	ccl38a.4
Description	chemokine (C-C motif) ligand 38, duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-041014-163]
Organism	Danio rerio (zebrafish)
Synonym(s)	ccl-chr20d, ccl38ad, dr20_wga1544_1_386533, e7f788, si:dkeyp-59a8.3, zgc:171266
Paralog(s)	4 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.16e3 1.16e3	96.11 96.11	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.55e3 1.55e3	94.82 94.82	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	2.70e3 2.70e3	90.98 90.98	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	6.68e3 6.68e3	77.64 77.64	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	7.49e3 7.49e3	74.93 74.93	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	7.57e3 7.57e3	74.65 74.65	AEIR AEIR
UBERON:0000033	head	[+] 1 stage UBERON:0000066fully formed stage	7.83e3 7.83e3	73.79 73.79	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	8.08e3 8.08e3	72.96 72.96	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	8.14e3 8.14e3	72.74 72.74	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	9.73e3 9.73e3	67.43 67.43	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.20e4 1.20e4	59.70 59.70	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.25e4 1.25e4	58.08 58.08	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.27e4 1.27e4	57.41 57.41	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.50e4 1.50e4	49.85 49.85	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.60e4 1.60e4	46.35 46.35	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.69e4 1.69e4	43.54 43.54	AEIR AEIR
UBERON:0000948	heart	[+] 1 stage UBERON:0000066fully formed stage	1.90e4 1.90e4	36.54 36.54	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	2.14e4 2.14e4 2.50e4	28.28 28.28 16.23	AEIR AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	2.26e4 2.26e4	24.27 24.27	AEIR AEIR
UBERON:0000922	embryo	[+] 1 stage ZFS:0000037Larval:Day 5	2.32e4 2.32e4	22.41 22.41	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Otophysi	4 genes ENSDARG00000041835 ccl38a.5 ENSDARG00000041919 ccl38.1 ENSDARG00000041923 ccl38.6 ENSDARG00000105263 BX908792.2	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000041917.

Cross-references

Ensembl	ENSDARG00000041917 (ccl38a.4)
ZFIN	ZDB-GENE-041014-163 (ccl38a.4)
EMBL	BX957287
Uniprot/SPTREMBL	Q5TYP9, Q5TYP9_DANRE