D. rerio Gene: mbd3b - ENSDARG00000042029 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042029
Namembd3b
Descriptionmethyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
OrganismDanio rerio (zebrafish)
Synonym(s)cb357, cb99, mdb3b, sb:cb357, sb:cb99, wu:fc41c05, zgc:111851

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
795
  • 795
  • 825
  • 901
  • 1.16e3
  • 1.23e3
  • 1.89e3
97.34
  • 97.34
  • 97.24
  • 96.99
  • 96.13
  • 95.88
  • 93.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
800
  • 800
  • 1.07e3
  • 1.43e3
  • 7.07e3
  • 1.27e4
97.32
  • 97.32
  • 96.42
  • 95.23
  • 76.33
  • 57.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
827
  • 827
  • 1.05e3
  • 1.08e3
  • 1.16e3
  • 1.19e3
  • 1.31e3
  • 1.42e3
  • 1.49e3
  • 1.69e3
  • 1.87e3
97.23
  • 97.23
  • 96.49
  • 96.37
  • 96.11
  • 96.03
  • 95.62
  • 95.26
  • 95.00
  • 94.33
  • 93.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
934
  • 934
96.87
  • 96.87
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
945
  • 945
96.84
  • 96.84
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.01e3
  • 1.01e3
  • 4.79e3
96.64
  • 96.64
  • 83.96
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.01e3
  • 1.01e3
96.60
  • 96.60
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.08e3
  • 1.08e3
96.39
  • 96.39
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
  • UBERON:0000066fully formed stage
1.08e3
  • 1.08e3
  • 1.08e3
  • 1.10e3
  • 1.15e3
  • 1.16e3
  • 1.28e3
  • 1.30e3
  • 1.34e3
  • 1.73e3
  • 1.78e3
  • 2.12e3
  • 2.13e3
  • 3.65e3
  • 3.93e3
  • 9.61e3
  • 1.17e4
  • 1.41e4
  • 1.45e4
  • 1.46e4
96.39
  • 96.39
  • 96.38
  • 96.33
  • 96.14
  • 96.13
  • 95.72
  • 95.64
  • 95.52
  • 94.22
  • 94.05
  • 92.91
  • 92.86
  • 87.79
  • 86.85
  • 67.82
  • 60.73
  • 52.86
  • 51.51
  • 51.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.29e3
  • 1.29e3
95.67
  • 95.67
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.31e3
  • 1.31e3
  • 1.55e3
  • 1.45e4
95.62
  • 95.62
  • 94.82
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.00e3
  • 2.00e3
  • 2.12e3
  • 2.42e3
93.29
  • 93.29
  • 92.91
  • 91.91
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
2.99e3
  • 2.99e3
  • 3.64e3
  • 7.20e3
  • 7.71e3
  • 8.46e3
89.99
  • 89.99
  • 87.80
  • 75.90
  • 74.18
  • 71.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.60e3
  • 4.60e3
  • 9.82e3
84.61
  • 84.61
  • 67.11
AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
5.34e3
  • 5.34e3
  • 1.10e4
  • 1.14e4
  • 1.14e4
  • 1.15e4
  • 1.17e4
  • 1.28e4
  • 1.29e4
82.14
  • 82.14
  • 63.14
  • 61.75
  • 61.75
  • 61.53
  • 60.70
  • 57.13
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.54e3
  • 5.54e3
81.45
  • 81.45
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
6.89e3
  • 6.89e3
  • 8.54e3
  • 8.79e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
76.92
  • 76.92
  • 71.41
  • 70.57
  • 69.98
  • 69.43
  • 69.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
6.93e3
  • 6.93e3
  • 9.36e3
  • 1.21e4
76.80
  • 76.80
  • 68.65
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.87e3
  • 7.87e3
73.65
  • 73.65
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.94e3
  • 7.94e3
73.41
  • 73.41
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.50e3
  • 8.50e3
71.56
  • 71.56
AEIR
  • AEIR
UBERON:2000001Kupffer's vesicle
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
8.71e3
  • 8.71e3
  • 9.19e3
  • 9.19e3
70.82
  • 70.82
  • 69.22
  • 69.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.98e3
  • 8.98e3
69.95
  • 69.95
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.07e3
  • 9.07e3
69.62
  • 69.62
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.82e3
  • 9.82e3
67.13
  • 67.13
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.37
  • 66.37
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
1.08e4
  • 1.08e4
  • 1.12e4
  • 1.20e4
  • 1.25e4
  • 1.28e4
  • 1.32e4
63.87
  • 63.87
  • 62.48
  • 59.98
  • 58.31
  • 57.12
  • 55.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
1.11e4
  • 1.11e4
62.90
  • 62.90
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.62
  • 62.62
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.82
  • 60.82
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.51
  • 60.51
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
1.18e4
  • 1.18e4
  • 1.18e4
  • 1.21e4
60.50
  • 60.50
  • 60.50
  • 59.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.02
  • 60.02
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
1.23e4
  • 1.23e4
  • 1.23e4
  • 1.25e4
  • 1.26e4
  • 1.38e4
  • 1.39e4
58.80
  • 58.80
  • 58.80
  • 58.31
  • 57.68
  • 53.83
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.29e4
  • 1.29e4
  • 1.36e4
56.79
  • 56.79
  • 54.52
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
1.30e4
  • 1.30e4
  • 1.34e4
  • 1.42e4
56.49
  • 56.49
  • 54.97
  • 52.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.15
  • 56.15
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
  • 1.46e4
55.82
  • 55.82
  • 51.26
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.56
  • 55.56
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.34e4
  • 1.34e4
  • 1.49e4
54.99
  • 54.99
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.68
  • 53.68
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.81
  • 46.81
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX005203, CABZ01066812
EnsemblENSDARG00000042029 (mbd3b)
Uniprot/SPTREMBLF1QL92, F1QL92_DANRE
ZFINZDB-GENE-030131-9792 (mbd3b)

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