D. rerio Gene: pou3f3a - ENSDARG00000042032 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042032
Namepou3f3a
DescriptionPOU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
OrganismDanio rerio (zebrafish)
Synonym(s)b0s7i5, b0s7i6, b0s7i7, b5ddp9, brn-1.1, brn1.1, o57514, pou12, q6is23, q6nzu9, q6pe22, q7zu57, q90433, q90436, tai-ji, wu:fc33a11, zp12, zp12pou

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
2.95e3
  • 2.95e3
  • 3.62e3
  • 3.72e3
  • 4.19e3
  • 5.17e3
  • 5.35e3
  • 6.23e3
  • 7.52e3
  • 8.31e3
  • 1.27e4
90.12
  • 90.12
  • 87.90
  • 87.56
  • 85.98
  • 82.70
  • 82.10
  • 79.13
  • 74.81
  • 72.17
  • 57.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000068embryo stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
4.02e3
  • 4.02e3
  • 4.25e3
  • 4.84e3
  • 6.45e3
  • 6.70e3
  • 7.02e3
  • 8.54e3
  • 9.70e3
  • 1.14e4
  • 1.21e4
  • 1.26e4
  • 1.26e4
  • 1.27e4
  • 1.31e4
  • 1.31e4
  • 1.32e4
  • 1.47e4
  • 1.50e4
86.55
  • 86.55
  • 85.77
  • 83.80
  • 78.41
  • 77.58
  • 76.50
  • 71.41
  • 67.51
  • 61.75
  • 59.49
  • 57.89
  • 57.73
  • 57.33
  • 56.27
  • 56.23
  • 55.77
  • 50.68
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.47e3
  • 4.47e3
  • 1.65e4
85.04
  • 85.04
  • 44.86
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
4.48e3
  • 4.48e3
  • 4.98e3
  • 6.79e3
  • 7.47e3
  • 8.15e3
  • 8.30e3
  • 8.54e3
85.00
  • 85.00
  • 83.33
  • 77.27
  • 75.00
  • 72.72
  • 72.22
  • 71.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
5.43e3
  • 5.43e3
  • 5.97e3
  • 5.97e3
  • 6.22e3
  • 6.22e3
  • 6.89e3
  • 7.47e3
81.81
  • 81.81
  • 80.00
  • 80.00
  • 79.16
  • 79.16
  • 76.92
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
5.77e3
  • 5.77e3
  • 7.91e3
  • 1.45e4
80.68
  • 80.68
  • 73.53
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
5.81e3
  • 5.81e3
  • 7.80e3
  • 7.86e3
  • 8.09e3
  • 8.45e3
  • 8.83e3
  • 9.67e3
  • 9.96e3
80.55
  • 80.55
  • 73.90
  • 73.67
  • 72.90
  • 71.72
  • 70.44
  • 67.63
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
6.29e3
  • 6.29e3
  • 6.29e3
  • 6.64e3
  • 7.47e3
  • 7.86e3
  • 7.86e3
  • 9.13e3
  • 9.34e3
78.94
  • 78.94
  • 78.94
  • 77.77
  • 74.98
  • 73.67
  • 73.67
  • 69.43
  • 68.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
6.40e3
  • 6.40e3
  • 6.54e3
  • 6.64e3
  • 6.64e3
  • 7.03e3
  • 7.47e3
  • 8.96e3
  • 9.60e3
78.56
  • 78.56
  • 78.12
  • 77.77
  • 77.77
  • 76.46
  • 74.99
  • 69.99
  • 67.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
6.40e3
  • 6.40e3
  • 6.72e3
  • 6.72e3
  • 7.47e3
  • 7.80e3
  • 8.22e3
  • 9.71e3
  • 1.02e4
78.56
  • 78.56
  • 77.49
  • 77.49
  • 74.98
  • 73.90
  • 72.48
  • 67.48
  • 65.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
6.72e3
  • 6.72e3
77.49
  • 77.49
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
7.14e3
  • 7.14e3
76.08
  • 76.08
AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 7.91e3
  • 8.04e3
  • 9.34e3
74.99
  • 74.99
  • 73.52
  • 73.07
  • 68.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
74.99
  • 74.99
  • 74.99
  • 74.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.26e3
  • 8.26e3
72.34
  • 72.34
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
8.40e3
  • 8.40e3
  • 9.35e3
  • 9.64e3
71.89
  • 71.89
  • 68.70
  • 67.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.48e3
  • 8.48e3
71.60
  • 71.60
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
8.59e3
  • 8.59e3
  • 9.16e3
  • 1.07e4
  • 1.29e4
71.25
  • 71.25
  • 69.33
  • 64.31
  • 56.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
9.06e3
  • 9.06e3
69.68
  • 69.68
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
9.56e3
  • 9.56e3
  • 1.12e4
  • 1.16e4
  • 1.32e4
  • 1.45e4
67.99
  • 67.99
  • 62.34
  • 61.20
  • 55.97
  • 51.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
9.78e3
  • 9.78e3
  • 1.28e4
67.25
  • 67.25
  • 57.22
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.01e4
  • 1.01e4
66.12
  • 66.12
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.03e4
  • 1.03e4
65.63
  • 65.63
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.03e4
  • 1.03e4
65.59
  • 65.59
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.05e4
  • 1.05e4
  • 1.26e4
  • 1.34e4
64.98
  • 64.98
  • 57.87
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.51
  • 64.51
AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.07e4
  • 1.07e4
  • 1.10e4
64.27
  • 64.27
  • 63.32
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.07e4
  • 1.07e4
64.25
  • 64.25
AEIR
  • AEIR
UBERON:0009622pronephric proximal straight tubule
  • ZFS:0000028Segmentation:26+ somites
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
1.16e4
  • 1.16e4
  • 1.17e4
  • 1.28e4
  • 1.75e4
  • 1.75e4
61.10
  • 61.10
  • 60.81
  • 57.08
  • 41.42
  • 41.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.21
  • 55.21
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.40
  • 54.40
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.72
  • 52.72
AEIR
  • AEIR
UBERON:0007308pronephric distal early tubule
  • ZFS:0000028Segmentation:26+ somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.80
  • 48.80
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.49
  • 42.49
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.29e4
  • 2.29e4
23.42
  • 23.42
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.33e4
  • 2.33e4
22.05
  • 22.05
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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