D. rerio Gene: si:ch211-145c1.1 - ENSDARG00000042063 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042063
Namesi:ch211-145c1.1
Descriptionsi:ch211-145c1.1 [Source:ZFIN;Acc:ZDB-GENE-070912-81]
OrganismDanio rerio (zebrafish)
Paralog(s)11 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
73.3
  • 73.3
  • 264
  • 736
  • 2.12e3
  • 2.47e3
99.76
  • 99.76
  • 99.12
  • 97.54
  • 92.92
  • 91.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
224
  • 224
99.25
  • 99.25
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000036Larval:Day 4
269
  • 269
  • 6.14e3
  • 9.79e3
  • 1.12e4
  • 1.36e4
  • 1.64e4
  • 1.83e4
99.10
  • 99.10
  • 79.44
  • 67.24
  • 62.55
  • 54.54
  • 45.02
  • 38.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
514
  • 514
98.28
  • 98.28
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
555
  • 555
98.14
  • 98.14
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
810
  • 810
97.29
  • 97.29
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.04e3
  • 1.04e3
96.52
  • 96.52
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.29e3
  • 1.29e3
95.68
  • 95.68
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.61e3
  • 1.61e3
94.63
  • 94.63
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.24e3
  • 2.24e3
92.51
  • 92.51
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.57e3
  • 2.57e3
91.40
  • 91.40
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
4.62e3
  • 4.62e3
  • 4.89e3
  • 8.99e3
  • 1.02e4
  • 1.07e4
  • 1.13e4
84.53
  • 84.53
  • 83.62
  • 69.89
  • 65.77
  • 64.06
  • 62.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.92e3
  • 4.92e3
83.53
  • 83.53
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
5.79e3
  • 5.79e3
80.61
  • 80.61
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.84e3
  • 5.84e3
80.45
  • 80.45
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.17
  • 66.17
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.13
  • 56.13
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.95
  • 54.95
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.64
  • 52.64
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
1.53e4
  • 1.53e4
  • 2.77e4
48.67
  • 48.67
  • 7.41
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.83e4
  • 1.83e4
  • 1.95e4
38.88
  • 38.88
  • 34.61
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.81
  • 32.81
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.10e4
  • 2.10e4
29.82
  • 29.82
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.25e4
  • 2.25e4
24.54
  • 24.54
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.30e4
  • 2.30e4
22.88
  • 22.88
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.32e4
  • 2.32e4
22.32
  • 22.32
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi5 genesCompare expression
Eukaryota11 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000042063.

Cross-references

EnsemblENSDARG00000042063 (si:ch211-145c1.1)
ZFINZDB-GENE-070912-81 (si:ch211-145c1.1)
EMBLBX322231
Uniprot/SPTREMBLB0S5U5, B0S5U5_DANRE, B0S5U6, B0S5U6_DANRE

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