D. rerio Gene: pacsin1b - ENSDARG00000042128 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042128
Namepacsin1b
Descriptionprotein kinase C and casein kinase substrate in neurons 1b [Source:ZFIN;Acc:ZDB-GENE-050913-35]
OrganismDanio rerio (zebrafish)
Synonym(s)fe25d06, pacsin1, syndapin i, wu:fe25d06, zgc:114042
Orthologs(s)24 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.04e3
  • 2.04e3
  • 2.15e3
  • 3.98e3
  • 1.22e4
93.16
  • 93.16
  • 92.79
  • 86.69
  • 59.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.79e3
  • 2.79e3
90.65
  • 90.65
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
3.35e3
  • 3.35e3
  • 3.40e3
  • 3.89e3
  • 4.01e3
  • 5.13e3
  • 5.43e3
  • 5.51e3
  • 5.75e3
  • 5.99e3
  • 6.98e3
88.78
  • 88.78
  • 88.63
  • 86.99
  • 86.56
  • 82.82
  • 81.81
  • 81.56
  • 80.76
  • 79.96
  • 76.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.89e3
  • 3.89e3
86.96
  • 86.96
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
4.37e3
  • 4.37e3
  • 5.30e3
  • 5.62e3
  • 6.68e3
  • 8.23e3
  • 8.88e3
85.36
  • 85.36
  • 82.25
  • 81.19
  • 77.64
  • 72.43
  • 70.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
5.07e3
  • 5.07e3
  • 5.43e3
  • 5.46e3
  • 5.49e3
  • 5.54e3
  • 5.57e3
  • 6.38e3
  • 6.95e3
  • 7.75e3
  • 7.78e3
  • 8.33e3
  • 8.86e3
  • 8.86e3
  • 1.06e4
  • 1.47e4
  • 1.47e4
  • 1.48e4
83.02
  • 83.02
  • 81.84
  • 81.72
  • 81.62
  • 81.46
  • 81.36
  • 78.63
  • 76.73
  • 74.06
  • 73.95
  • 72.10
  • 70.33
  • 70.32
  • 64.50
  • 50.90
  • 50.68
  • 50.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
5.35e3
  • 5.35e3
  • 6.78e3
  • 7.34e3
82.09
  • 82.09
  • 77.29
  • 75.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.61e3
  • 5.61e3
81.23
  • 81.23
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.73e3
  • 5.73e3
  • 5.87e3
80.83
  • 80.83
  • 80.34
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
7.75e3
  • 7.75e3
  • 9.25e3
  • 1.00e4
  • 1.19e4
  • 1.20e4
74.04
  • 74.04
  • 69.02
  • 66.40
  • 60.13
  • 59.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.80e3
  • 7.80e3
73.90
  • 73.90
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.40e3
  • 8.40e3
71.87
  • 71.87
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.46e3
  • 8.46e3
71.66
  • 71.66
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.00e3
  • 9.00e3
69.86
  • 69.86
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.33e3
  • 9.33e3
68.77
  • 68.77
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.42e3
  • 9.42e3
68.46
  • 68.46
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.61e3
  • 9.61e3
67.81
  • 67.81
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
9.76e3
  • 9.76e3
  • 1.63e4
67.32
  • 67.32
  • 45.36
AEIR
  • AEIR
  • AEIR
UBERON:0002100trunk
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.97e3
  • 9.97e3
66.62
  • 66.62
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.94
  • 64.94
AEIR
  • AEIR
UBERON:0007812post-anal tail
  • ZFS:0000035Larval:Protruding-mouth
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.49e4
57.12
  • 57.12
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.34e4
57.11
  • 57.11
  • 54.97
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.34e4
57.11
  • 57.11
  • 55.24
AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.29e4
  • 1.29e4
  • 1.49e4
56.65
  • 56.65
  • 49.97
AEIR
  • AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.42e4
  • 1.42e4
52.49
  • 52.49
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.09
  • 51.09
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.52
  • 49.52
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.40
  • 48.40
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.25
  • 43.25
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
31.00
  • 31.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000042128.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression
Eumetazoa5 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000042128.

Cross-references

EnsemblENSDARG00000042128 (pacsin1b)
ZFINZDB-GENE-050913-35 (pacsin1b)
EMBLBC097107, BC165817, CU694224, CU855791, CU855800, CU914470
Uniprot/SPTREMBLB2GTA5, B2GTA5_DANRE, F8W574, F8W574_DANRE
Uniprot/SWISSPROTPACN1_DANRE, Q4V920

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