D. rerio Gene: smek1 - ENSDARG00000042187 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042187
Namesmek1
DescriptionSMEK homolog 1, suppressor of mek1 (Dictyostelium) [Source:ZFIN;Acc:ZDB-GENE-030131-3958]
OrganismDanio rerio (zebrafish)
Synonym(s)fc60g09, si:dkey-65b13.2, wu:fc60g09

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
579
  • 579
  • 733
  • 1.85e3
  • 3.83e3
  • 5.07e3
98.06
  • 98.06
  • 97.55
  • 93.81
  • 87.19
  • 83.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
854
  • 854
97.14
  • 97.14
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.07e3
  • 1.07e3
96.44
  • 96.44
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.10e3
  • 1.10e3
96.32
  • 96.32
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000066fully formed stage
1.22e3
  • 1.22e3
  • 2.54e3
  • 3.63e3
  • 3.72e3
  • 3.80e3
  • 3.81e3
  • 4.21e3
  • 4.31e3
  • 4.44e3
  • 4.44e3
  • 4.76e3
  • 4.95e3
  • 5.32e3
  • 5.48e3
  • 1.43e4
95.93
  • 95.93
  • 91.49
  • 87.86
  • 87.53
  • 87.29
  • 87.23
  • 85.91
  • 85.58
  • 85.15
  • 85.12
  • 84.06
  • 83.42
  • 82.18
  • 81.66
  • 51.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.45e3
  • 1.45e3
95.16
  • 95.16
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.61e3
  • 1.61e3
  • 1.50e4
94.62
  • 94.62
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.84e3
  • 1.84e3
  • 2.61e3
  • 2.86e3
  • 2.88e3
  • 3.03e3
  • 4.06e3
  • 4.25e3
  • 4.36e3
  • 4.91e3
  • 6.76e3
93.86
  • 93.86
  • 91.27
  • 90.44
  • 90.35
  • 89.86
  • 86.40
  • 85.78
  • 85.39
  • 83.55
  • 77.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
1.95e3
  • 1.95e3
  • 2.03e3
  • 2.54e3
  • 4.17e3
  • 4.48e3
  • 4.55e3
93.49
  • 93.49
  • 93.22
  • 91.50
  • 86.04
  • 85.00
  • 84.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.27e3
  • 2.27e3
92.41
  • 92.41
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.39e3
  • 2.39e3
92.01
  • 92.01
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.48e3
  • 2.48e3
91.71
  • 91.71
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.48e3
  • 2.48e3
  • 2.94e3
91.69
  • 91.69
  • 90.16
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.91e3
  • 2.91e3
  • 5.34e3
90.26
  • 90.26
  • 82.11
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.21e3
  • 3.21e3
89.24
  • 89.24
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.45e3
  • 3.45e3
  • 4.05e3
  • 5.19e3
  • 7.74e3
88.46
  • 88.46
  • 86.43
  • 82.63
  • 74.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.47e3
  • 3.47e3
88.38
  • 88.38
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.49e3
  • 3.49e3
88.33
  • 88.33
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.79e3
  • 3.79e3
87.30
  • 87.30
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.95e3
  • 3.95e3
86.78
  • 86.78
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.99e3
  • 3.99e3
86.63
  • 86.63
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.15e3
  • 4.15e3
  • 4.87e3
86.12
  • 86.12
  • 83.68
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
4.22e3
  • 4.22e3
  • 5.07e3
85.86
  • 85.86
  • 83.04
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.58e3
  • 4.58e3
84.67
  • 84.67
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.59e3
  • 4.59e3
  • 5.47e3
  • 5.88e3
84.63
  • 84.63
  • 81.70
  • 80.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.68e3
  • 4.68e3
84.34
  • 84.34
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.73e3
  • 4.73e3
84.17
  • 84.17
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.20e3
  • 5.20e3
82.60
  • 82.60
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.41e3
  • 5.41e3
81.89
  • 81.89
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.96e3
  • 5.96e3
80.06
  • 80.06
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.94e3
  • 6.94e3
76.76
  • 76.76
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.11e3
  • 7.11e3
76.19
  • 76.19
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.31e3
  • 8.31e3
72.17
  • 72.17
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLAL929220
EnsemblENSDARG00000042187 (smek1)
Uniprot/SWISSPROTPP4R3_DANRE, Q5SP90
ZFINZDB-GENE-030131-3958 (smek1)

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