D. rerio Gene: myl13 - ENSDARG00000042245 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042245
Namemyl13
Descriptionmyosin, light chain 13 [Source:ZFIN;Acc:ZDB-GENE-040426-1593]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:66286, zgc:77943
Orthologs(s)12 orthologs
Paralog(s)49 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
195
  • 195
  • 201
  • 237
  • 241
  • 448
  • 799
  • 1.32e3
  • 2.28e3
  • 5.41e3
  • 1.25e4
99.35
  • 99.35
  • 99.33
  • 99.21
  • 99.20
  • 98.50
  • 97.33
  • 95.57
  • 92.37
  • 81.89
  • 57.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
243
  • 243
99.19
  • 99.19
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
292
  • 292
99.02
  • 99.02
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
342
  • 342
  • 350
  • 389
  • 489
  • 498
  • 606
  • 2.59e3
  • 5.28e3
  • 1.37e4
  • 1.53e4
98.86
  • 98.86
  • 98.83
  • 98.70
  • 98.37
  • 98.34
  • 97.98
  • 91.33
  • 82.31
  • 54.01
  • 48.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
353
  • 353
  • 448
  • 475
98.82
  • 98.82
  • 98.50
  • 98.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
644
  • 644
  • 8.01e3
97.85
  • 97.85
  • 73.18
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.27e3
  • 1.27e3
95.76
  • 95.76
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.39e3
  • 1.39e3
95.37
  • 95.37
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.59e3
  • 1.59e3
94.68
  • 94.68
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.07e3
  • 2.07e3
93.07
  • 93.07
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
3.96e3
  • 3.96e3
86.75
  • 86.75
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.28e3
  • 4.28e3
  • 1.42e4
  • 1.89e4
85.67
  • 85.67
  • 52.60
  • 36.72
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001774skeletal muscle of trunk
  • ZFS:0000037Larval:Day 5
4.98e3
  • 4.98e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.83e3
  • 5.83e3
  • 1.90e4
80.48
  • 80.48
  • 36.45
AEIR
  • AEIR
  • AEIR
UBERON:0008229craniocervical region musculature
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.96e3
  • 8.96e3
  • 1.05e4
  • 1.12e4
70.00
  • 70.00
  • 64.99
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.03e4
  • 1.03e4
  • 1.75e4
65.43
  • 65.43
  • 41.42
AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.08e4
  • 1.08e4
  • 1.14e4
  • 1.16e4
63.87
  • 63.87
  • 61.75
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.12e4
  • 1.12e4
  • 1.16e4
  • 1.33e4
  • 1.34e4
  • 1.34e4
  • 1.41e4
  • 1.41e4
62.48
  • 62.48
  • 61.09
  • 55.53
  • 55.24
  • 54.97
  • 52.75
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
  • 1.31e4
56.86
  • 56.86
  • 56.24
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.62
  • 55.62
AEIR
  • AEIR
UBERON:2001089myoseptum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.40
  • 39.40
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression
Deuterostomia7 genesCompare expression
Eukaryota49 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000042245.

Cross-references

EnsemblENSDARG00000042245 (myl13)
ZFINZDB-GENE-040426-1593 (myl13)
EMBLAF434191, BC055583, BC062288
Uniprot/SPTREMBLF1QQ39, F1QQ39_DANRE, Q7ZUB0, Q7ZUB0_DANRE

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