D. rerio Gene: syndig1l - ENSDARG00000042390 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042390
Namesyndig1l
Descriptionsynapse differentiation inducing 1-like [Source:ZFIN;Acc:ZDB-GENE-041001-116]
OrganismDanio rerio (zebrafish)
Synonym(s)dspc1, si:dkey-263b2.1, tmem90a

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
5.14e3
  • 5.14e3
82.78
  • 82.78
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
9.77e3
  • 9.77e3
67.28
  • 67.28
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.59
  • 54.59
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.43e4
  • 1.43e4
  • 1.54e4
  • 2.01e4
  • 2.17e4
  • 2.23e4
52.15
  • 52.15
  • 48.57
  • 32.62
  • 27.47
  • 25.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
  • 1.79e4
52.10
  • 52.10
  • 40.00
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.54e4
  • 1.54e4
  • 1.85e4
48.58
  • 48.58
  • 37.96
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.39
  • 31.39
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.25e4
  • 2.25e4
24.74
  • 24.74
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLAL928790, BC171615, BC171619, BX255897
EnsemblENSDARG00000042390 (syndig1l)
Uniprot/SPTREMBLB7ZVK3, B7ZVK3_DANRE
Uniprot/SWISSPROTQ5TZE2, SYN1L_DANRE
ZFINZDB-GENE-041001-116 (syndig1l)

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