D. rerio Gene: odf3b - ENSDARG00000042391 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042391
Nameodf3b
Descriptionouter dense fiber of sperm tails 3B [Source:ZFIN;Acc:ZDB-GENE-030131-7464]
OrganismDanio rerio (zebrafish)
Synonym(s)b3dik7, fj19d04, odf3, odf3l, q1l9g0, q7t2d9, shippo1, shpp, shpp1, si:dkeyp-1h4.4, wu:fj19d04, zgc:63985
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
240
  • 240
99.20
  • 99.20
AEIR
  • AEIR
UBERON:0002120pronephros
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
2.99e3
  • 2.99e3
  • 5.34e3
  • 1.49e4
90.00
  • 90.00
  • 82.14
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.91e3
  • 5.91e3
80.22
  • 80.22
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.01e3
  • 8.01e3
73.17
  • 73.17
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
9.95e3
  • 9.95e3
  • 1.06e4
  • 1.11e4
  • 1.18e4
  • 1.59e4
66.69
  • 66.69
  • 64.46
  • 62.78
  • 60.49
  • 46.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007298pronephric proximal convoluted tubule
  • ZFS:0000028Segmentation:26+ somites
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000028Segmentation:26+ somites
1.05e4
  • 1.05e4
  • 1.12e4
  • 1.12e4
  • 1.14e4
  • 1.19e4
  • 1.20e4
  • 1.21e4
  • 1.26e4
64.98
  • 64.98
  • 62.48
  • 62.48
  • 61.75
  • 60.00
  • 59.98
  • 59.36
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009622pronephric proximal straight tubule
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.14e4
  • 1.14e4
  • 1.14e4
  • 1.21e4
  • 1.23e4
61.75
  • 61.75
  • 61.75
  • 59.36
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
1.20e4
  • 1.20e4
  • 1.25e4
59.98
  • 59.98
  • 58.31
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.26e4
  • 1.26e4
  • 1.52e4
  • 1.78e4
  • 1.79e4
  • 1.80e4
  • 1.81e4
  • 1.83e4
57.70
  • 57.70
  • 49.10
  • 40.43
  • 40.18
  • 39.85
  • 39.42
  • 38.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.31e4
  • 1.31e4
  • 1.52e4
56.07
  • 56.07
  • 49.16
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.60
  • 53.60
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.92
  • 51.92
AEIR
  • AEIR
UBERON:0007308pronephric distal early tubule
  • ZFS:0000028Segmentation:26+ somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.06
  • 49.06
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.27
  • 45.27
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.53
  • 44.53
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.67e4
  • 1.67e4
44.10
  • 44.10
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.72
  • 40.72
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.79
  • 36.79
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.89e4
  • 1.89e4
  • 1.98e4
36.56
  • 36.56
  • 33.79
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.90e4
  • 1.90e4
  • 2.12e4
  • 2.14e4
  • 2.26e4
36.25
  • 36.25
  • 28.88
  • 28.29
  • 24.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
36.00
  • 36.00
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.33
  • 34.33
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.48
  • 33.48
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
28.07
  • 28.07
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Opisthokonta2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000042391.

Cross-references

EnsemblENSDARG00000042391 (odf3b)
ZFINZDB-GENE-030131-7464 (odf3b)
EMBLBC054587, BC163161, BC163187, BX571879, CR318588
Uniprot/SWISSPROTA3KQA5, ODF3B_DANRE

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