D. rerio Gene: foxd5 - ENSDARG00000042485 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042485
Namefoxd5
Descriptionforkhead box D5 [Source:ZFIN;Acc:ZDB-GENE-980605-4]
OrganismDanio rerio (zebrafish)
Synonym(s)fkd8, forkhead-8, zgc:114027

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
734
  • 734
  • 1.22e3
  • 1.47e3
  • 1.66e3
  • 1.90e3
  • 2.20e3
97.55
  • 97.55
  • 95.93
  • 95.07
  • 94.46
  • 93.64
  • 92.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000014Blastula:Sphere
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.46e3
  • 1.46e3
  • 1.89e3
  • 2.26e3
  • 2.70e3
  • 5.75e3
  • 7.12e3
  • 8.96e3
  • 1.37e4
  • 1.56e4
  • 1.81e4
  • 1.83e4
95.10
  • 95.10
  • 93.67
  • 92.44
  • 90.97
  • 80.73
  • 76.15
  • 69.99
  • 54.25
  • 47.75
  • 39.42
  • 38.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
1.84e3
  • 1.84e3
  • 1.93e3
  • 1.76e4
93.83
  • 93.83
  • 93.55
  • 41.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
5.74e3
  • 5.74e3
  • 9.66e3
  • 1.17e4
  • 1.20e4
  • 1.22e4
  • 1.54e4
  • 2.10e4
  • 2.11e4
80.77
  • 80.77
  • 67.67
  • 60.67
  • 59.68
  • 59.20
  • 48.30
  • 29.71
  • 29.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.79e3
  • 5.79e3
80.60
  • 80.60
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
5.81e3
  • 5.81e3
  • 1.19e4
80.56
  • 80.56
  • 59.99
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
9.27e3
  • 9.27e3
  • 1.31e4
68.97
  • 68.97
  • 56.22
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
9.55e3
  • 9.55e3
  • 1.09e4
  • 1.49e4
68.02
  • 68.02
  • 63.61
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.12e4
  • 1.12e4
  • 1.49e4
  • 1.84e4
66.67
  • 66.67
  • 66.67
  • 62.50
  • 62.50
  • 50.00
  • 38.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.08e4
  • 1.31e4
  • 1.49e4
66.67
  • 66.67
  • 66.65
  • 63.87
  • 56.23
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
1.07e4
  • 1.07e4
  • 1.16e4
  • 1.18e4
  • 1.38e4
  • 1.41e4
64.28
  • 64.28
  • 61.09
  • 60.50
  • 53.83
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009611midbrain neural plate
  • ZFS:0000022Gastrula:Bud
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0003062primitive knot
  • ZFS:0000019Gastrula:Shield
1.22e4
  • 1.22e4
59.08
  • 59.08
AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000020Gastrula:75%-epiboly
1.26e4
  • 1.26e4
57.68
  • 57.68
AEIR
  • AEIR
UBERON:0007285presumptive paraxial mesoderm
  • ZFS:0000020Gastrula:75%-epiboly
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000016Blastula:30%-epiboly
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.50e4
  • 1.50e4
  • 1.57e4
49.78
  • 49.78
  • 47.56
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.67e4
  • 1.67e4
44.13
  • 44.13
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.04
  • 44.04
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
42.91
  • 42.91
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.46
  • 41.46
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.77e4
  • 1.77e4
  • 1.78e4
  • 1.92e4
40.79
  • 40.79
  • 40.49
  • 35.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.77e4
  • 1.77e4
40.75
  • 40.75
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000042485 (foxd5)
ZFINZDB-GENE-980605-4 (foxd5)
EMBLAL845168
Uniprot/SPTREMBLB0R0B2, B0R0B2_DANRE

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