D. rerio Gene: actc1a - ENSDARG00000042535 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000042535
Nameactc1a
Descriptionactin, alpha, cardiac muscle 1a [Source:ZFIN;Acc:ZDB-GENE-040520-4]
OrganismDanio rerio (zebrafish)
Synonym(s)actc1l, actcl, alpha cardiac actin, hm:zewp0073, unm s434, unm_s434

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
14.3
  • 14.3
  • 652
  • 2.87e3
99.96
  • 99.96
  • 97.82
  • 90.38
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
142
  • 142
  • 148
  • 156
  • 257
  • 360
99.53
  • 99.53
  • 99.51
  • 99.48
  • 99.14
  • 98.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
155
  • 155
  • 302
99.49
  • 99.49
  • 98.99
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
513
  • 513
  • 1.20e4
98.29
  • 98.29
  • 59.99
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
543
  • 543
  • 5.09e3
98.19
  • 98.19
  • 82.97
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
572
  • 572
98.09
  • 98.09
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
696
  • 696
97.67
  • 97.67
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.32e3
  • 1.32e3
95.58
  • 95.58
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.15e3
  • 2.15e3
92.79
  • 92.79
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000068embryo stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
3.02e3
  • 3.02e3
  • 7.13e3
  • 1.14e4
  • 1.29e4
  • 1.45e4
  • 1.49e4
89.88
  • 89.88
  • 76.12
  • 61.70
  • 56.79
  • 51.56
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.98e3
  • 3.98e3
86.68
  • 86.68
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.26e3
  • 4.26e3
85.74
  • 85.74
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.53e3
  • 4.53e3
84.83
  • 84.83
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.99e3
  • 4.99e3
83.29
  • 83.29
AEIR
  • AEIR
UBERON:0001133cardiac muscle tissue
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 9.96e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 66.67
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
  • 1.31e4
  • 1.34e4
  • 1.37e4
62.50
  • 62.50
  • 56.24
  • 54.97
  • 54.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000023Segmentation:1-4 somites
1.14e4
  • 1.14e4
61.75
  • 61.75
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.33
  • 61.33
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.24
  • 60.24
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000029Pharyngula:Prim-5
1.19e4
  • 1.19e4
59.99
  • 59.99
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.25e4
  • 1.25e4
  • 1.54e4
58.28
  • 58.28
  • 48.27
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.78
  • 57.78
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • ZFS:0000033Hatching:Long-pec
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.07
  • 53.07
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.65
  • 50.65
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.28
  • 45.28
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.83
  • 42.83
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.10e4
  • 2.10e4
29.81
  • 29.81
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
29.10
  • 29.10
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBC071341, BX248136, CU695215
EnsemblENSDARG00000042535 (actc1a)
Uniprot/SPTREMBLQ6IQR3, Q6IQR3_DANRE
ZFINZDB-GENE-040520-4 (actc1a)

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